Characterization of the complete mitochondrial genome of the Pamir yak (Bos grunniens)

被引：8

作者：

Guo, Xian ^{[1
]}

Wu, Xiaoyun ^{[1
]}

Chu, Min ^{[1
]}

Bao, Pengjia ^{[1
]}

Xiong, Lin ^{[1
]}

Liang, Chunnian ^{[1
]}

Ding, Xuezhi ^{[1
]}

Pei, Jie ^{[1
]}

Yan, Ping ^{[1
]}

机构：

[1] Chinese Acad Agr Sci, Lanzhou Inst Husb & Pharmaceut Sci, Key Lab Yak Breeding Engn Gansu Prov, 335 Jiangouyan, Lanzhou 730050, Gansu, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期

关键词：

Illumina sequencing; iterative mapping; mitogenome; phylogeny; yak; SEQUENCE; BISON;

D O I：

10.1080/23802359.2019.1667904

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Pamir yak (Bos grunniens) is a yak breed from Pamir Plateau with strong adaptation to the high-elevation, cold and anoxic environments. Its complete mitochondrial genome was determined to be 16,323 bp long with a moderately asymmetric nucleotide composition, and harbors the typical set of 37 mitochondrial genes and the noncoding control region. The PCGs start with the typical ATA or ATG codons, and end with TAA, TAG or the incomplete termination codon T. Phylogenetic analysis suggests that Pamir yak is most closely related to six other yak breeds (i.e. Datong, Pali, polled, Qilian, Seron and Sunan yaks).

引用

页码：3165 / 3166

页数：2

共 18 条

[1] Accurate annotation of protein-coding genes in mitochondrial genomes [J].

Al Arab, Marwa ;

zu Siederdissen, Christian Hoener ;

Tout, Kifah ;

Sahyoun, Abdullah H. ;

Stadler, Peter F. ;

Bernt, Matthias .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2017, 106 :209-216

[2] MITOS: Improved de novo metazoan mitochondrial genome annotation [J].

Bernt, Matthias ;

Donath, Alexander ;

Juehling, Frank ;

Externbrink, Fabian ;

Florentz, Catherine ;

Fritzsch, Guido ;

Puetz, Joern ;

Middendorf, Martin ;

Stadler, Peter F. .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319

[3] The complete sequence of mitochondrial genome of polled yak (Bos grunniens) [J].

Chu, Min ;

Wu, Xiaoyun ;

Liang, Chunnian ;

Pei, Jie ;

Ding, Xuezhi ;

Guo, Xian ;

Bao, Pengjia ;

Yan, Ping .

MITOCHONDRIAL DNA PART A, 2016, 27 (03) :2032-2033

[4] Complete mitochondrial DNA sequence analysis of Bison bison and bison-cattle hybrids: Function and phylogeny [J].

Douglas, Kory C. ;

Halbert, Natalie D. ;

Kolenda, Claire ;

Childers, Christopher ;

Hunter, David L. ;

Derr, James N. .

MITOCHONDRION, 2011, 11 (01) :166-175

[5] Fossil and genomic evidence constrains the timing of bison arrival in North America [J].

Froese, Duane ;

Stiller, Mathias ;

Heintzman, Peter D. ;

Reyes, Alberto V. ;

Zazula, Grant D. ;

Soares, Andre. R. ;

Meyere, Matthias ;

Hall, Elizabeth ;

Jensen, Britta J. L. ;

Arnold, Lee J. ;

MacPhee, Ross D. E. ;

Shapiro, Beth .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (13) :3457-3462

[6] The complete mitochondrial genome sequence and phylogenetic analysis of Maiwa Yak(Bos Grunniens) [J].

Fu, Donghai ;

Ma, Xiaoming ;

Jia, Congjun ;

Lei, Qinyi ;

Wu, Xiaoyun ;

Chu, Min ;

Ding, Xuezhi ;

Bao, Pengjia ;

Pei, Jie ;

Guo, Xian ;

Yan, Ping ;

Liang, Chunnian .

MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :1986-1987

[7] Characterization of the complete mitochondrial genome of the Seron yak (Bos grunniens) [J].

Guo, Xian ;

Wu, Xiaoyun ;

Bao, Pengjia ;

Chu, Min ;

Ding, Xuezhi ;

Xiong, Lin ;

Liang, Chunnnian ;

Pei, Jie ;

Yan, Ping .

MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02) :2256-2257

[8] Characterization of the complete mitochondrial genome of the Yushu yak (Bos grunniens) [J].

Guo, Xian ;

Bao, Pengjia ;

Chu, Min ;

Song, Rende ;

Ding, Xuezhi ;

Wu, Xiaoyun ;

Xiong, Lin ;

Liang, Chunnnian ;

Pei, Jie ;

Yan, Ping .

MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :1853-1854

[9] The complete mitochondrial genome of the Qinghai Plateau yak Bos grunniens (Cetartiodactyla: Bovidae) [J].

Guo, Xian ;

Pei, Jie ;

Bao, Pengjia ;

Chu, Min ;

Wu, Xiaoyun ;

Ding, Xuezhi ;

Yan, Ping .

MITOCHONDRIAL DNA PART A, 2016, 27 (04) :2889-2890

[10] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach [J].

Hahn, Christoph ;

Bachmann, Lutz ;

Chevreux, Bastien .

NUCLEIC ACIDS RESEARCH, 2013, 41 (13) :e129

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