IACP: a sequence-based tool for identifying anticancer peptides

被引:375
作者
Chen, Wei [1 ,4 ]
Ding, Hui [2 ]
Feng, Pengmian [3 ]
Lin, Hao [2 ,4 ]
Chou, Kuo-Chen [4 ,5 ]
机构
[1] North China Univ Sci & Technol, Ctr Genom & Computat Biol, Sch Sci, Dept Phys, Tangshan, Peoples R China
[2] Univ Elect Sci & Technol China, Sch Life Sci & Technol, Ctr Bioinformat, Key Lab Neuroinformat,Minist Educ, Chengdu 610054, Peoples R China
[3] North China Univ Sci & Technol, Sch Publ Hlth, Tangshan, Peoples R China
[4] Gordon Life Sci Inst, Belmont, MA USA
[5] King Abdulaziz Univ, CEGMR, Jeddah 21413, Saudi Arabia
关键词
anticancer peptides; PseAAC; g-gap dipeptide mode; incremental feature selection; iACP webserver; AMINO-ACID-COMPOSITION; PROTEIN STRUCTURAL CLASS; SUBCELLULAR LOCATION PREDICTION; LABEL LEARNING CLASSIFIER; SUPPORT VECTOR MACHINES; GENERAL-FORM; PHYSICOCHEMICAL PROPERTIES; ENSEMBLE CLASSIFIER; RECOMBINATION SPOTS; CODON USAGE;
D O I
10.18632/oncotarget.7815
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Cancer remains a major killer worldwide. Traditional methods of cancer treatment are expensive and have some deleterious side effects on normal cells. Fortunately, the discovery of anticancer peptides (ACPs) has paved a new way for cancer treatment. With the explosive growth of peptide sequences generated in the post genomic age, it is highly desired to develop computational methods for rapidly and effectively identifying ACPs, so as to speed up their application in treating cancer. Here we report a sequence-based predictor called iACP developed by the approach of optimizing the g-gap dipeptide components. It was demonstrated by rigorous crossvalidations that the new predictor remarkably outperformed the existing predictors for the same purpose in both overall accuracy and stability. For the convenience of most experimental scientists, a publicly accessible web-server for iACP has been established at http://lin.uestc.edu.cn/server/iACP, by which users can easily obtain their desired results.
引用
收藏
页码:16895 / 16909
页数:15
相关论文
共 147 条
  • [1] Oncolytic Activities of Host Defense Peptides
    Al-Benna, Sammy
    Shai, Yechiel
    Jacobsen, Frank
    Steinstraesser, Lars
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2011, 12 (11) : 8027 - 8051
  • [2] ALTHAUS IW, 1993, J BIOL CHEM, V268, P14875
  • [3] KINETIC-STUDIES WITH THE NONNUCLEOSIDE HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 REVERSE-TRANSCRIPTASE INHIBITOR U-90152E
    ALTHAUS, IW
    CHOU, JJ
    GONZALES, AJ
    DEIBEL, MR
    CHOU, KC
    KEZDY, FJ
    ROMERO, DL
    THOMAS, RC
    ARISTOFF, PA
    TARPLEY, WG
    REUSSER, F
    [J]. BIOCHEMICAL PHARMACOLOGY, 1994, 47 (11) : 2017 - 2028
  • [4] KINETIC-STUDIES WITH THE NONNUCLEOSIDE HIV-1 REVERSE-TRANSCRIPTASE INHIBITOR-U-88204E
    ALTHAUS, IW
    CHOU, JJ
    GONZALES, AJ
    DEIBEL, MR
    CHOU, KC
    KEZDY, FJ
    ROMERO, DL
    PALMER, JR
    THOMAS, RC
    ARISTOFF, PA
    TARPLEY, WG
    REUSSER, F
    [J]. BIOCHEMISTRY, 1993, 32 (26) : 6548 - 6554
  • [5] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    Altschul, SF
    Madden, TL
    Schaffer, AA
    Zhang, JH
    Zhang, Z
    Miller, W
    Lipman, DJ
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
  • [6] [Anonymous], AMINO ACIDS
  • [7] [Anonymous], BIOCH PHARM
  • [8] [Anonymous], FUNDAMENTALS ENZYME
  • [9] [Anonymous], ANN ONCOLOGY
  • [10] Epithelial antimicrobial peptides in host defense against infection
    Bals R.
    [J]. Respiratory Research, 1 (3)