Burkholderia jirisanensis sp nov., isolated from forest soil

被引:6
作者
Kim, Seil [1 ]
Gong, Gyeongtaek [2 ]
Woo, Han Min [2 ]
Kim, Yunje [2 ]
Um, Youngsoon [2 ]
机构
[1] Korea Res Inst Stand & Sci, Ctr Bioanal, 267 Gajeong Ro, Daejeon 305340, South Korea
[2] Korea Inst Sci & Technol, Clean Energy Res Ctr, 5 Hwarang Ro 14 Gil, Seoul 136791, South Korea
基金
新加坡国家研究基金会;
关键词
HIGHLY ACIDIC SWAMPS; DNA HYBRIDIZATION; ELEOCHARIS-DULCIS; BACTERIUM; IDENTIFICATION; PSEUDOMONAS; PATHOGEN; EZTAXON;
D O I
10.1099/ijsem.0.000867
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-negative, catalase-positive, mesophilic, obligately aerobic bacterium designated JRM2-1(T) was isolated from forest soil of Jirisan Mountain, Republic of Korea, and its taxonomic position was investigated based on a polyphasic taxonomic approach. Cells of strain JRM2-1(T) grew optimally at pH 5.0-7.0 and at 25 degrees C. Strain JRM2-1(T) was susceptible to chloramphenicol, gentamicin, kanamycin, nalidixic acid, rifampicin, streptomycin and tetracycline. On the basis of 16S rRNA gene sequence similarity, the closest neighbour of strain JRM2-1(T) was Burkholderia rhizosphaerae WR43(T) (98.1 %). On the basis of our phylogenetic analysis, strain JRM2-1(T) is clearly distinguished from related species of the genus Burkholderia and is clustered with plant-associated members of the genus. The major cellular fatty acids were C-16 : 0, C-17 : 0 cyclo and C-19 : 0 cyclo omega 8c. The polar lipid profile of strain JRM2-1(T) contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, several unidentified aminolipids and an unidentified aminophospholipid. The isoprenoid quinone of strain JRM2-1(T) was Q-8 and the DNA G + C content was 63.7 mol%. On the basis of our polyphasic taxonomic investigation, strain JRM2-1(T) is considered to represent a novel species in the genus Burkholderia, for which the name Burkholderia jirisanensis sp. nov. is proposed. The type strain is JRM2-1(T) (=AIM 0373(T) =KCTC 42072(T) =JCM 19985(T)).
引用
收藏
页码:1260 / 1267
页数:8
相关论文
共 46 条
[1]   Burkholderia bannensis sp nov., an acid-neutralizing bacterium isolated from torpedo grass (Panicum repens) growing in highly acidic swamps [J].
Aizawa, Tomoko ;
Vijarnsorn, Pisoot ;
Nakajima, Mutsuyasu ;
Sunairi, Michio .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 :1645-1650
[2]   Burkholderia acidipaludis sp. nov., aluminium-tolerant bacteria isolated from Chinese water chestnut (Eleocharis dulcis) growing in highly acidic swamps in South-East Asia [J].
Aizawa, Tomoko ;
Ve, Nguyen Bao ;
Vijarnsorn, Pisoot ;
Nakajima, Mutsuyasu ;
Sunairi, Michio .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 :2036-2041
[3]   Burkholderia heleia sp nov., a nitrogen-fixing bacterium isolated from an aquatic plant, Eleocharis dulcis, that grows in highly acidic swamps in actual acid sulfate soil areas of Vietnam [J].
Aizawa, Tomoko ;
Nguyen Bao Ve ;
Nakajima, Mutsuyasu ;
Sunairi, Michio .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 :1152-1157
[4]   Burkholderia megalochromosomata sp nov., isolated from grassland soil [J].
Baek, Inwoo ;
Seo, Boram ;
Lee, Imchang ;
Lee, Kihyun ;
Park, Sang-Cheol ;
Yi, Hana ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 :959-964
[5]   EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences [J].
Chun, Jongsik ;
Lee, Jae-Hak ;
Jung, Yoonyoung ;
Kim, Myungjin ;
Kim, Seil ;
Kim, Byung Kwon ;
Lim, Young-Woon .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :2259-2261
[6]  
DELEY J, 1970, EUR J BIOCHEM, V12, P133
[7]   ARCHAEA IN COASTAL MARINE ENVIRONMENTS [J].
DELONG, EF .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (12) :5685-5689
[8]   Phylogenetic Analysis of Burkholderia Species by Multilocus Sequence Analysis [J].
Estrada-de los Santos, Paulina ;
Vinuesa, Pablo ;
Martinez-Aguilar, Lourdes ;
Hirsch, Ann M. ;
Caballero-Mellado, Jesus .
CURRENT MICROBIOLOGY, 2013, 67 (01) :51-60
[9]   Burkholderia ginsengiterrae sp. nov. and Burkholderia panaciterrae sp. nov., antagonistic bacteria against root rot pathogen Cylindrocarpon destructans, isolated from ginseng soil [J].
Farh, Mohamed El-Agamy ;
Kim, Yeon-Ju ;
Hoang Van An ;
Sukweenadhi, Johan ;
Singh, Priyanka ;
Huq, Md. Amdadul ;
Yang, Deok-Chun .
ARCHIVES OF MICROBIOLOGY, 2015, 197 (03) :439-447
[10]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376