Control of Stimulus-Dependent Responses in Macrophages by SWI/SNF Chromatin Remodeling Complexes

被引:25
作者
Gatchalian, Jovylyn [1 ]
Liao, Jingwen [1 ,2 ]
Maxwell, Matthew B. [1 ,2 ]
Hargreaves, Diana C. [1 ]
机构
[1] Salk Inst Biol Studies, Mol & Cell Biol Lab, La Jolla, CA 92037 USA
[2] Univ Calif San Diego, Biol Sci Program, La Jolla, CA 92037 USA
基金
美国国家卫生研究院;
关键词
INDUCIBLE GENE-EXPRESSION; KAPPA-B-ZETA; BAF COMPLEX; TRANSCRIPTION FACTORS; NUCLEAR-PROTEIN; CELL IDENTITY; ACTIVATION; BRG1; ENHANCERS; SUBUNIT;
D O I
10.1016/j.it.2019.12.002
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Epigenetic regulation plays an important role in controlling the activation, timing, and resolution of innate immune responses in macrophages. Previously, SWI/SNF chromatin remodeling was found to define the kinetics and selectivity of gene activation in response to microbial ligands; however, these studies do not reflect a comprehensive understanding of SWI/SNF complex regulation. In 2018, a new variant of the SWI/SNF complex was identified with unknown function in inflammatory gene regulation. Here, we summarize the biochemical and genomic properties of SWI/SNF complex variants and the potential for increased regulatory control of innate immune transcriptional programs in light of such biochemical diversity. Finally, we review the development of SWI/SNF complex chemical inhibitors and degraders that could be used to modulate immune responses.
引用
收藏
页码:126 / 140
页数:15
相关论文
共 94 条
  • [1] Brg1 modulates enhancer activation in mesoderm lineage commitment
    Alexander, Jeffrey M.
    Hota, Swetansu K.
    He, Daniel
    Thomas, Sean
    Ho, Lena
    Pennacchio, Len A.
    Bruneau, Benoit G.
    [J]. DEVELOPMENT, 2015, 142 (08): : 1418 - 1430
  • [2] Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes
    Alpsoy, Aktan
    Dykhuizen, Emily C.
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2018, 293 (11) : 3892 - 3903
  • [3] The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers
    Alver, Burak H.
    Kim, Kimberly H.
    Lu, Ping
    Wang, Xiaofeng
    Manchester, Haley E.
    Wang, Weishan
    Haswell, Jeffrey R.
    Park, Peter J.
    Roberts, Charles W. M.
    [J]. NATURE COMMUNICATIONS, 2017, 8
  • [4] A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63
    Bao, Xiaomin
    Rubin, Adam J.
    Qu, Kun
    Zhang, Jiajing
    Giresi, Paul G.
    Chang, Howard Y.
    Khavari, Paul A.
    [J]. GENOME BIOLOGY, 2015, 16
  • [5] BET Protein Function Is Required for Inflammation: Brd2 Genetic Disruption and BET Inhibitor JQ1 Impair Mouse Macrophage Inflammatory Responses
    Belkina, Anna C.
    Nikolajczyk, Barbara S.
    Denis, Gerald V.
    [J]. JOURNAL OF IMMUNOLOGY, 2013, 190 (07) : 3670 - 3678
  • [6] Transcript Dynamics of Proinflammatory Genes Revealed by Sequence Analysis of Subcellular RNA Fractions
    Bhatt, Dev M.
    Pandya-Jones, Amy
    Tong, Ann-Jay
    Barozzi, Iros
    Lissner, Michelle M.
    Natoli, Gioacchino
    Black, Douglas L.
    Smale, Stephen T.
    [J]. CELL, 2012, 150 (02) : 279 - 290
  • [7] Akirin specifies NF-κB selectivity of Drosophila innate immune response via chromatin remodeling
    Bonnay, Francois
    Xuan-Hung Nguyen
    Cohen-Berros, Eva
    Troxler, Laurent
    Batsche, Eric
    Camonis, Jacques
    Takeuchi, Osamu
    Reichhart, Jean-Marc
    Matt, Nicolas
    [J]. EMBO JOURNAL, 2014, 33 (20) : 2349 - 2362
  • [8] The chromatin remodeler Brg1 activates enhancer repertoires to establish B cell identity and modulate cell growth
    Bossen, Claudia
    Murre, Caroline S.
    Chang, Aaron N.
    Mansson, Robert
    Rodewald, Hans-Reimer
    Murre, Cornelis
    [J]. NATURE IMMUNOLOGY, 2015, 16 (07) : 775 - +
  • [9] Targeted degradation of BRD9 reverses oncogenic gene expression in synovial sarcoma
    Brien, Gerard L.
    Remillard, David
    Shi, Junwei
    Hemming, Matthew L.
    Chabon, Jonathon
    Wynne, Kieran
    Dillon, Eugene T.
    Cagney, Gerard
    Van Mierlo, Guido
    Baltissen, Marijke P.
    Vermeulen, Michiel
    Qi, Jun
    Froehling, Stefan
    Gray, Nathanael S.
    Bradner, James E.
    Vakoc, Christopher R.
    Armstrong, Scott A.
    [J]. ELIFE, 2018, 7
  • [10] NF-κB Directs Dynamic Super Enhancer Formation in Inflammation and Atherogenesis
    Brown, Jonathan D.
    Lin, Charles Y.
    Duan, Qiong
    Griffin, Gabriel
    Federation, Alexander J.
    Paranal, Ronald M.
    Bair, Steven
    Newton, Gail
    Lichtman, Andrew H.
    Kung, Andrew L.
    Yang, Tianlun
    Wang, Hong
    Luscinskas, Francis W.
    Croce, Kevin J.
    Bradner, James E.
    Plutzky, Jorge
    [J]. MOLECULAR CELL, 2014, 56 (02) : 219 - 231