Estimation of level set trees using adaptive partitions

被引:3
作者
Holmstrom, Lasse [1 ]
Karttunen, Kyosti [2 ]
Klemela, Jussi
机构
[1] Univ Oulu, Dept Math Sci, Oulu, Finland
[2] Univ Oulu, CEMIS Oulu, Oulu, Finland
关键词
Cluster analysis; Flow cytometry; Kernel density estimation; Mode detection; Recursive partitioning; FLOW-CYTOMETRY DATA; NONPARAMETRIC-ESTIMATION; DENSITY CONTOUR; VISUALIZATION; RATES;
D O I
10.1007/s00180-016-0702-2
中图分类号
O21 [概率论与数理统计]; C8 [统计学];
学科分类号
020208 ; 070103 ; 0714 ;
摘要
We present methods for the estimation of level sets, a level set tree, and a volume function of a multivariate density function. The methods are such that the computation is feasible and estimation is statistically efficient in moderate dimensional cases (d approximate to 8) and for moderate sample sizes (n approximate to 50,000). We apply kernel estimation together with an adaptive partition of the sample space. We illustrate how level set trees can be applied in cluster analysis and in flow cytometry.
引用
收藏
页码:1139 / 1163
页数:25
相关论文
共 61 条
  • [1] Aaron C, 2013, TECHNICAL REPORT
  • [2] Aghaeepour N, 2010, FLOWMEANS NONPARAMET
  • [3] Aghaeepour N, 2013, NAT METHODS, V10, P228, DOI [10.1038/NMETH.2365, 10.1038/nmeth.2365]
  • [4] Rapid Cell Population Identification in Flow Cytometry Data
    Aghaeepour, Nima
    Nikolic, Radina
    Hoos, Holger H.
    Brinkman, Ryan R.
    [J]. CYTOMETRY PART A, 2011, 79A (01) : 6 - 13
  • [5] [Anonymous], 2010, Advances in neural information processing systems
  • [6] [Anonymous], 2003, Practical flow cytometry
  • [7] Clustering via nonparametric density estimation
    Azzalini, Adelchi
    Torelli, Nicola
    [J]. STATISTICS AND COMPUTING, 2007, 17 (01) : 71 - 80
  • [8] Convergence rates in nonparametric estimation of level sets
    Baíllo, A
    Cuesta-Albertos, JA
    Cuevas, A
    [J]. STATISTICS & PROBABILITY LETTERS, 2001, 53 (01) : 27 - 35
  • [9] Set estimation and nonparametric detection
    Baíllo, A
    Cuevas, A
    Justel, A
    [J]. CANADIAN JOURNAL OF STATISTICS-REVUE CANADIENNE DE STATISTIQUE, 2000, 28 (04): : 765 - 782
  • [10] Bashashati A., 2009, ADV BIOINFORMATICS, V2009