svReg: Structural varying-coefficient regression to differentiate how regional brain atrophy affects motor impairment for Huntington disease severity groups

被引:4
作者
Kim, Rakheon [1 ]
Mueller, Samuel [2 ,3 ]
Garcia, Tanya P. [4 ]
机构
[1] Texas A&M Univ, Dept Stat, 3143 TAMU, College Stn, TX 77843 USA
[2] Dept Math & Stat, Sydney, NSW, Australia
[3] Univ Sydney, Sch Math & Stat, Sydney, NSW, Australia
[4] Univ N Carolina, Gillings Sch Publ Hlth, Dept Biostat, Chapel Hill, NC USA
关键词
Huntington disease; interaction model; pliable Lasso; structural varying‐ coefficient regression; variable selection; VARIABLE SELECTION; MODEL SELECTION; PREMANIFEST; REGULARIZATION;
D O I
10.1002/bimj.202000312
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
For Huntington disease, identification of brain regions related to motor impairment can be useful for developing interventions to alleviate the motor symptom, the major symptom of the disease. However, the effects from the brain regions to motor impairment may vary for different groups of patients. Hence, our interest is not only to identify the brain regions but also to understand how their effects on motor impairment differ by patient groups. This can be cast as a model selection problem for a varying-coefficient regression. However, this is challenging when there is a pre-specified group structure among variables. We propose a novel variable selection method for a varying-coefficient regression with such structured variables and provide a publicly available R package svreg for implementation of our method. Our method is empirically shown to select relevant variables consistently. Also, our method screens irrelevant variables better than existing methods. Hence, our method leads to a model with higher sensitivity, lower false discovery rate and higher prediction accuracy than the existing methods. Finally, we found that the effects from the brain regions to motor impairment differ by disease severity of the patients. To the best of our knowledge, our study is the first to identify such interaction effects between the disease severity and brain regions, which indicates the need for customized intervention by disease severity.
引用
收藏
页码:1254 / 1271
页数:18
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