Ionomics: The functional genomics of elements

被引：84
作者：
Baxter, Ivan [1 ]
机构：
[1] USDA ARS Plant Genet, Res Unit, Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA
来源：
BRIEFINGS IN FUNCTIONAL GENOMICS | 2010年 / 9卷 / 02期
关键词：
ionomics; maize; Arabidopsis; mineral nutrition; ARABIDOPSIS-THALIANA; LOTUS-JAPONICUS; HOMEOSTASIS; PLANTS; NUTRIENT; SYSTEM;
D O I：
10.1093/bfgp/elp055
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
Ionomics is the study of elemental accumulation in living systems using high-throughput elemental profiling. This approach has been applied extensively in plants for forward and reverse genetics, screening diversity panels, and modeling of physiological states. In this review, I will discuss some of the advantages and limitations of the ionomics approach as well as the important parameters to consider when designing ionomics experiments, and how to evaluate ionomics data.
引用
收藏
页码：149 / 156
页数：8
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  • [1] Variation in molybdenum content across broadly distributed populations of Arabidopsis thaliana is controlled by a mitochondrial molybdenum transporter (MOT1)
    Baxter, Ivan
    Muthukumar, Balasubramaniam
    Park, Hyeong Cheol
    Buchner, Peter
    Lahner, Brett
    Danku, John
    Zhao, Keyan
    Lee, Joohyun
    Hawkesford, Malcolm J.
    Guerinot, Mary Lou
    Salt, David E.
    [J]. PLOS GENETICS, 2008, 4 (02):
  • [2] Purdue Ionomics Information Management System. An integrated functional genomics platform
    Baxter, Ivan
    Ouzzani, Mourad
    Orcun, Seza
    Kennedy, Brad
    Jandhyala, Shrinivas S.
    Salt, David E.
    [J]. PLANT PHYSIOLOGY, 2007, 143 (02) : 600 - 611
  • [3] Root Suberin Forms an Extracellular Barrier That Affects Water Relations and Mineral Nutrition in Arabidopsis
    Baxter, Ivan
    Hosmani, Prashant S.
    Rus, Ana
    Lahner, Brett
    Borevitz, Justin O.
    Muthukumar, Balasubramaniam
    Mickelbart, Michael V.
    Schreiber, Lukas
    Franke, Rochus B.
    Salt, David E.
    [J]. PLOS GENETICS, 2009, 5 (05)
  • [4] The leaf ionome as a multivariable system to detect a plant's physiological status
    Baxter, Ivan R.
    Vitek, Olga
    Lahner, Brett
    Muthukumar, Balasubrarnaniarn
    Borghi, Monica
    Morrissey, Joe
    Guerinot, Mary Lou
    Salt, David E.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (33) : 12081 - 12086
  • [5] Rapid characterization of plant mutants with an altered ion-profile: a case study using Lotus japonicus
    Chen, Zheng
    Watanabe, Toshihiro
    Shinano, Takuro
    Okazaki, Keiki
    Osaki, Mitsuru
    [J]. NEW PHYTOLOGIST, 2009, 181 (04) : 795 - 801
  • [6] Element interconnections in Lotus japonicus: A systematic study of the effects of element additions on different natural variants
    Chen, Zheng
    Watanabe, Toshihiro
    Shinano, Takuro
    Ezawa, Tatsuhiro
    Wasaki, Jun
    Kimura, Kazuhiko
    Osaki, Mitsuru
    Zhu, Yong-Guan
    [J]. SOIL SCIENCE AND PLANT NUTRITION, 2009, 55 (01) : 91 - 101
  • [7] Characterization of the yeast ionome:: a genome-wide analysis of nutrient mineral and trace element homeostasis in Saccharomyces cerevisiae -: art. no. R77
    Eide, DJ
    Clark, S
    Nair, TM
    Gehl, M
    Gribskov, M
    Guerinot, ML
    Harper, JF
    [J]. GENOME BIOLOGY, 2005, 6 (09)
  • [8] A strong effect of growth medium and organ type on the identification of QTLs for phytate and mineral concentrations in three Arabidopsis thaliana RIL populations
    Ghandilyan, Artak
    Ilk, Nadine
    Hanhart, Corrie
    Mbengue, Malick
    Barboza, Luis
    Schat, Henk
    Koornneef, Maarten
    El-Lithy, Mohamed
    Vreugdenhil, Dick
    Reymond, Matthieu
    Aarts, Mark G. M.
    [J]. JOURNAL OF EXPERIMENTAL BOTANY, 2009, 60 (05) : 1409 - 1425
  • [9] Micro-scaled high-throughput digestion of plant tissue samples for multi-elemental analysis
    Hansen, Thomas H.
    Laursen, Kristian H.
    Persson, Daniel P.
    Pedas, Pai
    Husted, Soren
    Schjoerring, Jan K.
    [J]. PLANT METHODS, 2009, 5
  • [10] Genomic scale profiling of nutrient and trace elements in Arabidopsis thaliana
    Lahner, B
    Gong, JM
    Mahmoudian, M
    Smith, EL
    Abid, KB
    Rogers, EE
    Guerinot, ML
    Harper, JF
    Ward, JM
    McIntyre, L
    Schroeder, JI
    Salt, DE
    [J]. NATURE BIOTECHNOLOGY, 2003, 21 (10) : 1215 - 1221
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