Recovering normal networks from shortest inter-taxa distance information

被引:12
作者
Bordewich, Magnus [1 ]
Huber, Katharina T. [2 ]
Moulton, Vincent [2 ]
Semple, Charles [3 ]
机构
[1] Univ Durham, Dept Comp Sci, Durham DH1 3LE, England
[2] Univ East Anglia, Sch Comp Sci, Norwich NR4 7TJ, Norfolk, England
[3] Univ Canterbury, Sch Math & Stat, Christchurch, New Zealand
关键词
Distance matrix; Tree-child network; Normal network; PHYLOGENETIC NETWORKS; HOMOPLASIES;
D O I
10.1007/s00285-018-1218-x
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Phylogenetic networks are a type of leaf-labelled, acyclic, directed graph used by biologists to represent the evolutionary history of species whose past includes reticulation events. A phylogenetic network is tree-child if each non-leaf vertex is the parent of a tree vertex or a leaf. Up to a certain equivalence, it has been recently shown that, under two different types of weightings, edge-weighted tree-child networks are determined by their collection of distances between each pair of taxa. However, the size of these collections can be exponential in the size of the taxa set. In this paper, we show that, if we have no shortcuts, that is, the networks are normal, the same results are obtained with only a quadratic number of inter-taxa distances by using the shortest distance between each pair of taxa. The proofs are constructive and give cubic-time algorithms in the size of the taxa sets for building such weighted networks.
引用
收藏
页码:571 / 594
页数:24
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