Dynamics of DNA tumbling in shear to rotational mixed flows: Pathways and periods

被引:37
作者
Lee, Joo Sung [1 ]
Shaqfeh, Eric S. G.
Muller, Susan J.
机构
[1] Univ Calif Berkeley, Dept Chem Engn, Berkeley, CA 94720 USA
[2] Stanford Univ, Dept Chem & Mech Engn, Berkeley, CA 94305 USA
来源
PHYSICAL REVIEW E | 2007年 / 75卷 / 04期
关键词
D O I
10.1103/PhysRevE.75.040802
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
The tumbling dynamics of DNA have been examined via experiments and Brownian dynamics (BD) simulations in mixed flows that vary from pure shear to pure rotation. In shear, tumbling pathways and periods agree well with earlier studies; in rotation-dominated flows, a new tumbling pathway is identified and experimentally observed. Based on these results, we have developed robust scaling laws for DNA tumbling in both shear and rotational flows and have found a critical flow-type parameter for transition from the shearlike flow regime to the rotation-dominated one.
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页数:4
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共 18 条
[1]   COIL-STRETCH TRANSITION OF DILUTE FLEXIBLE POLYMERS UNDER ULTRAHIGH VELOCITY-GRADIENTS [J].
DEGENNES, PG .
JOURNAL OF CHEMICAL PHYSICS, 1974, 60 (12) :5030-5042
[2]   Cyclic motion of a grafted polymer under shear flow [J].
Delgado-Buscalioni, R .
PHYSICAL REVIEW LETTERS, 2006, 96 (08)
[3]   Dynamics of a tethered polymer in shear flow [J].
Doyle, PS ;
Ladoux, B ;
Viovy, JL .
PHYSICAL REVIEW LETTERS, 2000, 84 (20) :4769-4772
[4]   FLOW BIREFRINGENCE OF DILUTE POLYMER-SOLUTIONS IN TWO-DIMENSIONAL FLOWS [J].
FULLER, GG ;
LEAL, LG .
RHEOLOGICA ACTA, 1980, 19 (05) :580-600
[5]   Brownian dynamics simulations of single DNA molecules in shear flow [J].
Hur, JS ;
Shaqfeh, ESG ;
Larson, RG .
JOURNAL OF RHEOLOGY, 2000, 44 (04) :713-742
[6]   Dynamics and configurational fluctuations of single DNA molecules in linear mixed flows [J].
Hur, JS ;
Shaqfeh, ESG ;
Babcock, HP ;
Chu, S .
PHYSICAL REVIEW E, 2002, 66 (01) :1-011915
[7]   The rheology of dilute solutions of flexible polymers: Progress and problems [J].
Larson, RG .
JOURNAL OF RHEOLOGY, 2005, 49 (01) :1-70
[8]   Recirculating flow accelerates DNA microarray hybridization in a microfluidic device [J].
Lee, Hyun Ho ;
Smoot, James ;
McMurray, Zack ;
Stahl, David A. ;
Yager, Paul .
LAB ON A CHIP, 2006, 6 (09) :1163-1170
[9]   Microfluidic four-roll mill for all flow types [J].
Lee, Joo Sung ;
Dylla-Spears, Rebecca ;
Teclemariam, Nerayo P. ;
Muller, Susan J. .
APPLIED PHYSICS LETTERS, 2007, 90 (07)
[10]   Stretching DNA [J].
Marko, JF ;
Siggia, ED .
MACROMOLECULES, 1995, 28 (26) :8759-8770