Cyclisation mechanisms in the biosynthesis of ribosomally synthesised and post-translationally modified peptides

被引:37
作者
Truman, Andrew W. [1 ]
机构
[1] John Innes Inst, Dept Mol Microbiol, Coloney Lane, Norwich NR4 7UH, Norfolk, England
基金
英国生物技术与生命科学研究理事会;
关键词
biosynthesis; cyclisation; enzymes; peptides; RiPPs; THIOETHER BOND FORMATION; MICROCIN B17 SYNTHETASE; GENOME-MINING APPROACH; NRPS ASSEMBLY LINES; NATURAL-PRODUCTS; GENE-CLUSTER; ESCHERICHIA-COLI; MASS-SPECTROMETRY; BACILLUS-SUBTILIS; CYCLIC-PEPTIDES;
D O I
10.3762/bjoc.12.120
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
Ribosomally synthesised and post-translationally modified peptides (RiPPs) are a large class of natural products that are remarkably chemically diverse given an intrinsic requirement to be assembled from proteinogenic amino acids. The vast chemical space occupied by RiPPs means that they possess a wide variety of biological activities, and the class includes antibiotics, co-factors, signalling molecules, anticancer and anti-HIV compounds, and toxins. A considerable amount of RiPP chemical diversity is generated from cyclisation reactions, and the current mechanistic understanding of these reactions will be discussed here. These cyclisations involve a diverse array of chemical reactions, including 1,4-nucleophilic additions, [4 + 2] cycloadditions, ATP-dependent heterocyclisation to form thiazolines or oxazolines, and radical-mediated reactions between unactivated carbons. Future prospects for RiPP pathway discovery and characterisation will also be highlighted.
引用
收藏
页码:1250 / 1268
页数:19
相关论文
共 164 条
[1]   Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature [J].
Arnison, Paul G. ;
Bibb, Mervyn J. ;
Bierbaum, Gabriele ;
Bowers, Albert A. ;
Bugni, Tim S. ;
Bulaj, Grzegorz ;
Camarero, Julio A. ;
Campopiano, Dominic J. ;
Challis, Gregory L. ;
Clardy, Jon ;
Cotter, Paul D. ;
Craik, David J. ;
Dawson, Michael ;
Dittmann, Elke ;
Donadio, Stefano ;
Dorrestein, Pieter C. ;
Entian, Karl-Dieter ;
Fischbach, Michael A. ;
Garavelli, John S. ;
Goeransson, Ulf ;
Gruber, Christian W. ;
Haft, Daniel H. ;
Hemscheidt, Thomas K. ;
Hertweck, Christian ;
Hill, Colin ;
Horswill, Alexander R. ;
Jaspars, Marcel ;
Kelly, Wendy L. ;
Klinman, Judith P. ;
Kuipers, Oscar P. ;
Link, A. James ;
Liu, Wen ;
Marahiel, Mohamed A. ;
Mitchell, Douglas A. ;
Moll, Gert N. ;
Moore, Bradley S. ;
Mueller, Rolf ;
Nair, Satish K. ;
Nes, Ingolf F. ;
Norris, Gillian E. ;
Olivera, Baldomero M. ;
Onaka, Hiroyasu ;
Patchett, Mark L. ;
Piel, Joern ;
Reaney, Martin J. T. ;
Rebuffat, Sylvie ;
Ross, R. Paul ;
Sahl, Hans-Georg ;
Schmidt, Eric W. ;
Selsted, Michael E. .
NATURAL PRODUCT REPORTS, 2013, 30 (01) :108-160
[2]   The Two-step Biosynthesis of Cyclic Peptides from Linear Precursors in a Member of the Plant Family Caryophyllaceae Involves Cyclization by a Serine Protease-like Enzyme [J].
Barber, Carla J. S. ;
Pujara, Pareshkumar T. ;
Reed, Darwin W. ;
Chiwocha, Shiela ;
Zhang, Haixia ;
Covello, Patrick S. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2013, 288 (18) :12500-12510
[3]   Demonstration That the Radical S-Adenosylmethionine (SAM) Enzyme PqqE Catalyzes de Novo Carbon-Carbon Cross-linking within a Peptide Substrate PqqA in the Presence of the Peptide Chaperone PqqD [J].
Barr, Ian ;
Latham, John A. ;
Iavarone, Anthony T. ;
Chantarojsiri, Teera ;
Hwang, Jennifer D. ;
Klinman, Judith P. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2016, 291 (17) :8877-8884
[4]   Structure of antibacterial peptide microcin J25: A 21-residue lariat protoknot [J].
Bayro, MJ ;
Mukhopadhyay, J ;
Swapna, GVT ;
Huang, JY ;
Ma, LC ;
Sineva, E ;
Dawson, PE ;
Montelione, GT ;
Ebright, RH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (41) :12382-12383
[5]   NMR, mass spectrometry and chemical evidence reveal a different chemical structure for methanobactin that contains oxazolone rings [J].
Behling, Lee A. ;
Hartsel, Scott C. ;
Lewis, David E. ;
DiSpirito, Alan A. ;
Choi, Dong W. ;
Masterson, Larry R. ;
Veglia, Gianluigi ;
Gallagher, Warren H. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (38) :12604-+
[6]  
Bergmann M, 1938, J BIOL CHEM, V124, P7
[7]   Peptide Macrocyclization by a Bifunctional Endoprotease [J].
Bernath-Levin, Kalia ;
Nelson, Clark ;
Elliott, Alysha G. ;
Jayasena, Achala S. ;
Millar, A. Harvey ;
Craik, David J. ;
Mylne, Joshua S. .
CHEMISTRY & BIOLOGY, 2015, 22 (05) :571-582
[8]   Crystal structure of the peptidyl-cysteine decarboxylase EpiD complexed with a pentapeptide substrate [J].
Blaesse, M ;
Kupke, T ;
Huber, R ;
Steinbacher, S .
EMBO JOURNAL, 2000, 19 (23) :6299-6310
[9]   The cyclic structure of microcin J25, a 21-residue peptide antibiotic from Escherichia coli [J].
Blond, A ;
Péduzzi, J ;
Goulard, C ;
Chiuchiolo, MJ ;
Barthélémy, M ;
Prigent, Y ;
Salomón, RA ;
Farías, RN ;
Moreno, F ;
Rebuffat, S .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1999, 259 (03) :747-755
[10]   Genetic Interception and Structural Characterization of Thiopeptide Cyclization Precursors from Bacillus cereus [J].
Bowers, Albert A. ;
Walsh, Christopher T. ;
Acker, Michael G. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (35) :12182-12184