Construction of five microRNAs prognostic markers and a prognostic model for clear cell renal cell carcinoma

被引:4
|
作者
Zhou, Qi [1 ]
Zhang, Zhi-Yu [1 ]
Ang, Xiao-Jie [1 ]
Hu, Can [1 ]
Ouyang, Jun [1 ]
机构
[1] Soochow Univ, Dept Urol, Affiliated Hosp 1, Suzhou, Peoples R China
关键词
MicroRNAs; renal clear cell carcinoma; TCGA; prognostic; bioinformatics; CANCER STATISTICS; IDENTIFICATION; PREDICTION; BIOMARKERS; SIGNATURE; SUBTYPES;
D O I
10.21037/tcr-21-37
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: To determine the role of miRNA in the progression and outcome of renal clear cell carcinoma (ccRCC), establish a model for predicting outcome in patients with ccRCC and verify it using a Cox regression model. The miRNA target genes were predicted to understand their biological functions. Methods: The microRNAs of 71 normal tissues and 545 tumor tissues were downloaded from TCGA (https://tcga-data.nci.nih.gov/tcga/). We also downloaded 537 clinical materials from this website. The miRNA difference analysis was carried out. A prognostic model was constructed using differential miRNA. The model was verified using Cox survival analysis, receiver operator characteristic (ROC), and independent predictive analysis. Results: MiR-130b-3p, miR-365b-3p, miR-149-5p, miR-155-5p, and miR-144-5p can be used as independent prognostic indicators. We also analyzed the related functions of the target gene and found that target genes of miRNAs are involved in the signal pathways of some tumors, including cholesterol metabolism, HIF-1 signal pathway, focus adhesion, the Rap1 signal pathway, and hepatitis C. Conclusions: The prognostic model constructed using five miRNAs is an independent and accurate factor. These miRNAs target genes are involved in regulating a variety of tumorigenesis and signal pathways. Therefore, we have reason to believe that the regulation of signal pathways by miRNA may play a critical role in the occurrence, development, and outcome of ccRCC, provide a new therapeutic target for ccRCC, and improve outcomes.
引用
收藏
页码:2337 / +
页数:18
相关论文
共 50 条
  • [41] Development and Validation of a Prognostic Gene Signature in Clear Cell Renal Cell Carcinoma
    Zhan, Chuanchuan
    Wang, Zichu
    Xu, Chao
    Huang, Xiao
    Su, Junzhou
    Chen, Bisheng
    Wang, Mingshan
    Qi, Zhihong
    Bai, Peiming
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2021, 8
  • [42] Construction of a Novel Immune-Related lncRNA Pair Signature with Prognostic Significance for Kidney Clear Cell Renal Cell Carcinoma
    Sun, Jian-Xuan
    Xia, Qi-Dong
    Liu, Chen-Qian
    Xu, Jin-Zhou
    Xun, Yang
    Lu, Jun-Lin
    Hu, Jia
    Wang, Shao-Gang
    DISEASE MARKERS, 2021, 2021
  • [43] Prognostic implications of Aquaporin 9 expression in clear cell renal cell carcinoma
    Wen-Hao Xu
    Shen-Nan Shi
    Yue Xu
    Jun Wang
    Hong-Kai Wang
    Da-Long Cao
    Guo-Hai Shi
    Yuan-Yuan Qu
    Hai-Liang Zhang
    Ding-Wei Ye
    Journal of Translational Medicine, 17
  • [44] Prognostic implications of Aquaporin 9 expression in clear cell renal cell carcinoma
    Xu, Wen-Hao
    Shi, Shen-Nan
    Xu, Yue
    Wang, Jun
    Wang, Hong-Kai
    Cao, Da-Long
    Shi, Guo-Hai
    Qu, Yuan-Yuan
    Zhang, Hai-Liang
    Ye, Ding-Wei
    JOURNAL OF TRANSLATIONAL MEDICINE, 2019, 17 (01)
  • [45] Development of an Individualized Ubiquitin Prognostic Signature for Clear Cell Renal Cell Carcinoma
    Wu, Yue
    Zhang, Xi
    Wei, Xian
    Feng, Huan
    Hu, Bintao
    Deng, Zhiyao
    Liu, Bo
    Luan, Yang
    Ruan, Yajun
    Liu, Xiaming
    Liu, Zhuo
    Liu, Jihong
    Wang, Tao
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2021, 9
  • [46] Prognostic Significance of CD24 in Clear Cell Renal Cell Carcinoma
    Arik, Deniz
    Can, Cavit
    Dundar, Emine
    Kabukcuoglu, Sare
    Pasaoglu, Ozgul
    PATHOLOGY & ONCOLOGY RESEARCH, 2017, 23 (02) : 409 - 416
  • [47] S100A11 is a potential prognostic marker for clear cell renal cell carcinoma
    Gabril, Manal
    Girgis, Hala
    Scorilas, Andreas
    Rotondo, Fabio
    Wala, Samantha
    Bjarnason, Georg A.
    Ding, Qiang
    Evans, Andrew
    Tawedrous, Eriny
    Pasic, Maria
    Finelli, Antonio
    Al-Haddad, Sahar
    Yousef, George M.
    CLINICAL & EXPERIMENTAL METASTASIS, 2016, 33 (01) : 63 - 71
  • [48] Identifying TYMP as an Immune Prognostic Marker in Clear Cell Renal Cell Carcinoma
    Chen, Shao-An
    Zhang, Jun-Peng
    Wang, Ning
    Chen, Ji
    TECHNOLOGY IN CANCER RESEARCH & TREATMENT, 2023, 22
  • [49] Integrative Analysis of Sirtuins and Their Prognostic Significance in Clear Cell Renal Cell Carcinoma
    Tan, Ying
    Li, Bijuan
    Peng, Fang
    Gong, Guanghui
    Li, Ning
    FRONTIERS IN ONCOLOGY, 2020, 10
  • [50] An eleven metabolic gene signature-based prognostic model for clear cell renal cell carcinoma
    Wu, Yue
    Wei, Xian
    Feng, Huan
    Hu, Bintao
    Liu, Bo
    Luan, Yang
    Ruan, Yajun
    Liu, Xiaming
    Liu, Zhuo
    Wang, Shaogang
    Liu, Jihong
    Wang, Tao
    AGING-US, 2020, 12 (22): : 23165 - 23186