Predictive Analytics for Glaucoma Using Data From the All of Us Research Program

被引:38
作者
Baxter, Sally L. [1 ,2 ,3 ]
Saseendrakumar, Bharanidharan Radha [1 ,2 ,3 ]
Paul, Paulina [3 ]
Kim, Jihoon [3 ]
Bonomi, Luca [3 ]
KUO, TSUNG-TING [3 ]
Loperena, Roxana [4 ]
Ratsimbazafy, Francis [4 ]
Boerwinkle, Eric [5 ]
Cicek, Mine [6 ]
Clark, Cheryl R. [7 ]
Cohn, Elizabeth [8 ]
Gebo, Kelly
Mayo, Kelsey [9 ,10 ]
Mockrin, Stephen [11 ]
Schully, Sheri D. [9 ,10 ]
Ramirez, Andrea [12 ]
Ohno-Machado, Lucila [3 ,13 ]
机构
[1] Univ Calif San Diego, Viterbi Family Dept Ophthalmol, 9415 Campus Point Dr,MC 0946, La Jolla, CA 92093 USA
[2] Univ Calif San Diego, Shiley Eye Inst, 9415 Campus Point Dr,MC 0946, La Jolla, CA 92093 USA
[3] Univ Calif San Diego, UCSD Hlth Dept Biomed Informat, La Jolla, CA 92093 USA
[4] Vanderbilt Univ, Med Ctr, Vanderbilt Inst Clin & Translat Res, Nashville, TN USA
[5] Univ Texas Hlth Sci Ctr Houston, Sch Publ Hlth, Houston, TX 77030 USA
[6] Mayo Clin, Dept Lab Med & Pathol, Rochester, MN USA
[7] Brigham & Womens Hosp, Dept Med, 75 Francis St, Boston, MA 02115 USA
[8] CUNY Hunter Coll, Hunter Bellevue Sch Nursing, New York, NY 10021 USA
[9] Johns Hopkins Univ, Sch Med, Dept Med, Baltimore, MD 21205 USA
[10] NIH, All Us Res Program, Bldg 10, Bethesda, MD 20892 USA
[11] Leidos Inc, Div Life Sci, Frederick, MD USA
[12] Vanderbilt Univ, Med Ctr, Dept Med, Nashville, TN USA
[13] Vet Affairs San Diego Healthcare Syst, Div Hlth Serv Res & Dev, La Jolla, CA USA
基金
美国国家卫生研究院;
关键词
OPEN-ANGLE GLAUCOMA; HEALTH RECORD SYSTEMS; NERVE-FIBER LAYER; OCULAR HYPERTENSION; RISK; PREVALENCE; MODELS; IMPLEMENTATION; REQUIREMENTS; ASSOCIATION;
D O I
10.1016/j.ajo.2021.01.008
中图分类号
R77 [眼科学];
学科分类号
100212 ;
摘要
center dot PURPOSE: To (1) use All of Us (AoU) data to validate a previously published single-center model predicting the need for surgery among individuals with glaucoma, (2) train new models using AoU data, and (3) share insights regarding this novel data source for ophthalmic research. center dot DESIGN: Development and evaluation of machine learning models. center dot METHODS: Electronic health record data were extracted from AoU for 1,231 adults diagnosed with primary open -angle glaucoma. The single-center model was applied to AoU data for external validation. AoU data were then used to train new models for predicting the need for glau-coma surgery using multivariable logistic regression, ar-tificial neural networks, and random forests. Five-fold cross-validation was performed. Model performance was & nbsp; evaluated based on area under the receiver operating char-acteristic curve (AUC), accuracy, precision, and recall. center dot RESULTS: The mean (standard deviation) age of the AoU cohort was 69.1 (10.5) years, with 57.3% women and 33.5% black, significantly exceeding representation in the single-center cohort ( P = .04 and P < .001, re-spectively). Of 1,231 participants, 286 (23.2%) needed glaucoma surgery. When applying the single-center model to AoU data, accuracy was 0.69 and AUC was only 0.49. Using AoU data to train new models resulted in supe-rior performance: AUCs ranged from 0.80 (logistic re-gression) to 0.99 (random forests). center dot CONCLUSIONS: Models trained with national AoU data achieved superior performance compared with using single-center data. Although AoU does not currently include ophthalmic imaging, it of-fers several strengths over similar big-data sources such as claims data. AoU is a promising new data source for ophthalmic research.& nbsp;
引用
收藏
页码:74 / 86
页数:13
相关论文
共 46 条
  • [1] All of Us Research Hub, METHODS
  • [2] The "All of Us" Research Program
    Denny J.C.
    Rutter J.L.
    Goldstein D.B.
    Philippakis A.
    Smoller J.W.
    Jenkins G.
    Dishman E.
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2019, 381 (07) : 668 - 676
  • [3] Baxter, SYSTEMIC DIS GLAUCOM
  • [4] Baxter S., DATA EXTRACTION CLEA
  • [5] Baxter SL, 2021, OPHTHALMOLOGY, V128, P165, DOI 10.1016/j.ophtha.2020.06.007
  • [6] Machine Learning-Based Predictive Modeling of Surgical Intervention in Glaucoma Using Systemic Data From Electronic Health Records
    Baxter, Sally L.
    Marks, Charles
    Kuo, Tsung-Ting
    Ohno-Machado, Lucila
    Weinreb, Robert N.
    [J]. AMERICAN JOURNAL OF OPHTHALMOLOGY, 2019, 208 : 30 - 40
  • [7] Machine learning classifiers in glaucoma
    Bowd, Christopher
    Goldbaum, Michael H.
    [J]. OPTOMETRY AND VISION SCIENCE, 2008, 85 (06) : 396 - 405
  • [8] China Kadoorie Biobank of 0.5 million people: survey methods, baseline characteristics and long-term follow-up
    Chen, Zhengming
    Chen, Junshi
    Collins, Rory
    Guo, Yu
    Peto, Richard
    Wu, Fan
    Li, Liming
    [J]. INTERNATIONAL JOURNAL OF EPIDEMIOLOGY, 2011, 40 (06) : 1652 - 1666
  • [9] Special Requirements for Electronic Health Record Systems in Ophthalmology
    Chiang, Michael F.
    Boland, Michael V.
    Brewer, Allen
    Epley, K. David
    Horton, Mark B.
    Lim, Michele C.
    McCannel, Colin A.
    Patel, Sayjal J.
    Silverstone, David E.
    Wedemeyer, Linda
    Lum, Flora
    [J]. OPHTHALMOLOGY, 2011, 118 (08) : 1681 - 1687
  • [10] Chollet F., 2015, KERAS 20 COMPUTER SO