iRNA-m7G: Identifying N7-methylguanosine Sites by Fusing Multiple Features

被引:92
作者
Chen, Wei [1 ,2 ]
Feng, Pengmian [1 ]
Song, Xiaoming [2 ]
Lv, Hao [3 ]
Lin, Hao [3 ]
机构
[1] Chengdu Univ Tradit Chinese Med, Innovat Inst Chinese Med & Pharm, Chengdu 611730, Sichuan, Peoples R China
[2] North China Univ Sci & Technol, Sch Life Sci, Ctr Genom & Computat Biol, Tangshan 063000, Peoples R China
[3] Univ Elect Sci & Technol China, Ctr Informat Biol, Sch Life Sci & Technol, Key Lab Neuroinformat,Minist Educ, Chengdu 610054, Sichuan, Peoples R China
关键词
IDENTIFICATION; PROTEINS; PARAMETERS; MACHINE; PSEKNC; RNAS;
D O I
10.1016/j.omtn.2019.08.022
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
As an essential post-transcriptional modification, N-7-methylguanosine (m7G) regulates nearly every step of the life cycle of mRNA. Accurate identification of the m7G site in the transcriptome will provide insights into its biological functions and mechanisms. Although the m7G-methylated RNA immunoprecipitation sequencing (MeRIP-seq) method has been proposed in this regard, it is still cost-ineffective for detecting the m7G site. Therefore, it is urgent to develop new methods to identify the m7G site. In this work, we developed the first computational predictor called iRNA-m7G to identify m7G sites in the human transcriptome. The feature fusion strategy was used to integrate both sequence- and structure-based features. In the jackknife test, iRNA-m7G obtained an accuracy of 89.88%. The superiority of iRNA-m7G for identifying m7G sites was also demonstrated by comparing with other methods. We hope that iRNA-m7G can become a useful tool to identify m7G sites. A user-friendly web server for iRNA-m7G is freely accessible at http://lin-group.cn/server/iRNA-m7G/.
引用
收藏
页码:269 / 274
页数:6
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