Neutral Theory, Transposable Elements, and Eukaryotic Genome Evolution

被引:68
作者
Arkhipova, Irina R. [1 ]
机构
[1] Marine Biol Lab, Josephine Bay Paul Ctr Comparat Mol Biol & Evolut, Woods Hole, MA 02543 USA
基金
美国国家卫生研究院;
关键词
mobile genetic elements; selfish DNA; molecular parasites; NONCODING SEQUENCES; GAG PROTEIN; DNA; RECOMBINATION; DROSOPHILA; SELECTION; INTEGRATION; ABUNDANCE; INSERTION; DYNAMICS;
D O I
10.1093/molbev/msy083
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Among the multitude of papers published yearly in scientific journals, precious few publications may be worth looking back in half a century to appreciate the significance of the discoveries that would later become common knowledge and get a chance to shape a field or several adjacent fields. Here, Kimura's fundamental concept of neutral mutation-random drift, which was published 50years ago, is re-examined in light of its pervasive influence on comparative genomics and, more specifically, on the contribution of transposable elements to eukaryotic genome evolution.
引用
收藏
页码:1332 / 1337
页数:6
相关论文
共 63 条
[1]   Genome-Wide Estimates of Transposable Element Insertion and Deletion Rates in Drosophila Melanogaster [J].
Adrion, Jeffrey R. ;
Song, Michael J. ;
Schrider, Daniel R. ;
Hahn, Matthew W. ;
Schaack, Sarah .
GENOME BIOLOGY AND EVOLUTION, 2017, 9 (05) :1329-1340
[2]   Deletion of ultraconserved elements yields viable mice [J].
Ahituv, Nadav ;
Zhu, Yiwen ;
Visel, Axel ;
Holt, Amy ;
Afzal, Veena ;
Pennacchio, Len A. ;
Rubin, Edward M. .
PLOS BIOLOGY, 2007, 5 (09) :1906-1911
[3]   Deleterious transposable elements and the extinction of asexuals [J].
Arkhipova, I ;
Meselson, M .
BIOESSAYS, 2005, 27 (01) :76-85
[4]   Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons [J].
Ashley, James ;
Cordy, Benjamin ;
Lucia, Diandra ;
Fradkin, Lee G. ;
Budnik, Vivian ;
Thomson, Travis .
CELL, 2018, 172 (1-2) :262-+
[5]   Population Genomics of Transposable Elements in Drosophila [J].
Barron, Maite G. ;
Fiston-Lavier, Anna-Sophie ;
Petrov, Dmitri A. ;
Gonzalez, Josefa .
ANNUAL REVIEW OF GENETICS, VOL 48, 2014, 48 :561-581
[6]   Exceptional Diversity, Non-Random Distribution, and Rapid Evolution of Retroelements in the B73 Maize Genome [J].
Baucom, Regina S. ;
Estill, James C. ;
Chaparro, Cristian ;
Upshaw, Naadira ;
Jogi, Ansuya ;
Deragon, Jean-Marc ;
Westerman, Richard P. ;
SanMiguel, Phillip J. ;
Bennetzen, Jeffrey L. .
PLOS GENETICS, 2009, 5 (11)
[7]   PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia [J].
Baudry, Celine ;
Malinsky, Sophie ;
Restituito, Matthieu ;
Kapusta, Aurelie ;
Rosa, Sarah ;
Meyer, Eric ;
Betermier, Mireille .
GENES & DEVELOPMENT, 2009, 23 (21) :2478-2483
[8]   Early life experience drives structural variation of neural genomes in mice [J].
Bedrosian, Tracy A. ;
Quayle, Carolina ;
Novaresi, Nicole ;
Gage, Fred. H. .
SCIENCE, 2018, 359 (6382) :1395-+
[9]   A distal enhancer and an ultraconserved exon are derived from a novel retroposon [J].
Bejerano, G ;
Lowe, CB ;
Ahituv, N ;
King, B ;
Siepel, A ;
Salama, SR ;
Rubin, EM ;
Kent, WJ ;
Haussler, D .
NATURE, 2006, 441 (7089) :87-90
[10]   Ultraconserved elements in the human genome [J].
Bejerano, G ;
Pheasant, M ;
Makunin, I ;
Stephen, S ;
Kent, WJ ;
Mattick, JS ;
Haussler, D .
SCIENCE, 2004, 304 (5675) :1321-1325