An Immune-Related Signature Predicted Survival in Patients With Kidney Papillary Cell Carcinoma

被引:6
作者
Shen, Junwen [1 ]
Wang, Rongjiang [1 ]
Chen, Yu [1 ]
Fang, Zhihai [1 ]
Tang, Jianer [1 ]
Yao, Jianxiang [1 ]
Ling, Yuhang [1 ]
Zhang, Lisha [1 ]
Zhang, Xu [2 ]
机构
[1] First Hosp Huzhou, Huzhou, Peoples R China
[2] Zhejiang Univ Sci & Technol, Hangzhou, Peoples R China
关键词
kidney papillary cell carcinoma; immune-related; genes; prognostic; signature; PATHWAY; EXPRESSION; GENES;
D O I
10.3389/fonc.2021.670047
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Immune-related genes are important factors in tumor progression. The main aim of this study was to identify the immune-related genes in kidney papillary cell carcinoma (pRCC) patients. We downloaded RNAseq data and clinical information of pRCC patients from the TCGA database and retrieved the immune-related genes list from Immport. From the data, we mined out 2,468 differential expression genes (DEGs) and 183 immune-related DEGs. Four hub DEGs (NTS, BIRC5, ELN, and CHGA) were identified after conducting Cox analysis and LASSO analysis. Moreover, the prognostic value of the signature based on four hub DEGs was verified using Kaplan-Meier analysis (P = 0.0041 in the training set and p = 0.021 in the test set) and ROC analysis (AUC: 0.957 in 1 year, 0.965 in 2 years, and 0.901 in 3 years in the training set, and 0.963 in 1 year, 0.898 in 2 years, and 0.742 in 3 years in the test set). Furthermore, we found that the high-risk score group had a higher percentage of B cells in the immune component, a higher expression of immune-related genes (CTLA4, LAG3, PDCD1LG2, and TIGIT), and a better immunotherapy response.
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页数:11
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共 29 条
[1]   Activation of matrix metalloproteinase-9 (MMP-9) by neurotensin promotes cell invasion and migration through ERK pathway in gastric cancer [J].
Akter, Hafeza ;
Park, Min ;
Kwon, Oh-Seung ;
Song, Eun Joo ;
Park, Won-Sang ;
Kang, Min-Jung .
TUMOR BIOLOGY, 2015, 36 (08) :6053-6062
[2]   ImmPort: disseminating data to the public for the future of immunology [J].
Bhattacharya, Sanchita ;
Andorf, Sandra ;
Gomes, Linda ;
Dunn, Patrick ;
Schaefer, Henry ;
Pontius, Joan ;
Berger, Patty ;
Desborough, Vince ;
Smith, Tom ;
Campbell, John ;
Thomson, Elizabeth ;
Monteiro, Ruth ;
Guimaraes, Patricia ;
Walters, Bryan ;
Wiser, Jeff ;
Butte, Atul J. .
IMMUNOLOGIC RESEARCH, 2014, 58 (2-3) :234-239
[3]   Landscape of Microsatellite Instability Across 39 Cancer Types [J].
Bonneville, Russell ;
Krook, Melanie A. ;
Kautto, Esko A. ;
Miya, Jharna ;
Wing, Michele R. ;
Chen, Hui-Zi ;
Reeser, Julie W. ;
Yu, Lianbo ;
Roychowdhury, Sameek .
JCO PRECISION ONCOLOGY, 2017, 1 :1-15
[4]   UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses [J].
Chandrashekar, Darshan S. ;
Bashel, Bhuwan ;
Balasubramanya, Sai Akshaya Hodigere ;
Creighton, Chad J. ;
Ponce-Rodriguez, Israel ;
Chakravarthi, Balabhadrapatruni V. S. K. ;
Varambally, Sooryanarayana .
NEOPLASIA, 2017, 19 (08) :649-658
[5]   The molecular characterization and therapeutic strategies of papillary renal cell carcinoma [J].
Chen, Qiwei ;
Cheng, Liang ;
Li, Quanlin .
EXPERT REVIEW OF ANTICANCER THERAPY, 2019, 19 (02) :169-175
[6]   Papillary renal cell carcinoma: A review of the current therapeutic landscape [J].
Courthod, Giulia ;
Tucci, Marcello ;
Di Maio, Massimo ;
Scagliotti, Giorgio V. .
CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY, 2015, 96 (01) :100-112
[7]   Chromogranin-A Regulates Macrophage Function and the Apoptotic Pathway in Murine DSS colitis [J].
Eissa, Nour ;
Hussein, Hayam ;
Kermarrec, Laetitia ;
Ali, Ahmed Y. ;
Marshall, Aaron ;
Metz-Boutigue, Marie-Helene ;
Hendy, Geoffrey N. ;
Bernstein, Charles N. ;
Ghia, Jean-Eric .
JOURNAL OF MOLECULAR MEDICINE-JMM, 2018, 96 (02) :183-198
[8]   Down-regulation of Survivin and Bcl-2 concomitant with the activation of caspase-3 as a mechanism of apoptotic death in KG1a and K562 cells upon exposure to a derivative from ciprofloxacin family [J].
Eslami, Farhad ;
Mahdavi, Majid ;
Babaei, Esmaeil ;
Hussen, Bashdar Mahmud ;
Mostafavi, Hossein ;
Shahbazi, Ahmad ;
Hidayat, Hazha Jamal .
TOXICOLOGY AND APPLIED PHARMACOLOGY, 2020, 409
[9]   A five-gene signature predicts overall survival of patients with papillary renal cell carcinoma [J].
Gao, Ze ;
Zhang, Dong ;
Duan, Yi ;
Yan, Lei ;
Fan, Yidong ;
Fang, Zhiqing ;
Liu, Zhaoxu .
PLOS ONE, 2019, 14 (03)
[10]   Increased Expression of BIRC2, BIRC3, and BIRC5 from the IAP Family in Mesenchymal Stem Cells of the Umbilical Cord Wharton's Jelly (WJS']JSC) in Younger Women Giving Birth Naturally [J].
Gil-Kulik, Paulina ;
Swistowska, Malgorzata ;
Kondracka, Adrianna ;
Chomik, Piotr ;
Krzyzanowski, Arkadiusz ;
Kwasniewska, Anna ;
Rahnama, Mansur ;
Kocki, Janusz .
OXIDATIVE MEDICINE AND CELLULAR LONGEVITY, 2020, 2020