Heredity as an Encoded Communication Process

被引:11
作者
Battail, Gerard [1 ]
机构
[1] Ecole Natl Super Telecommun Bretagne, Paris, France
关键词
Biological evolution; error-correcting codes; heredity; nested codes; soft codes; BIOLOGICAL EVOLUTION; INFORMATION;
D O I
10.1109/TIT.2009.2037044
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Heredity is relevant to information theory as a communication process. The conservation of genomes over intervals at the geological timescale and the existence of mutations at shorter intervals can be conciliated assuming that genomes possess intrinsic error-correction codes. The better conservation of old parts of genomes leads to assume that these codes are organized as a nested system set up during geological times, which protects a genomic message the better, the older it is. These hypotheses imply that: genomes are redundant, discrete species exist with a hierarchical taxonomy, successive generations are needed, evolution is contingent and saltationist; it trends towards increasing complexity. These consequences match features of the actual living world but their experimental confirmation needs a still lacking collaboration of biologists and information-theorists. It is suggested that genomic error-correcting codes could consist of "soft codes" where mutual dependence of symbols results from physical-chemical and linguistic constraints, not only mathematical equalities. The constraints incurred by DNA molecules moreover result in a nested structure. Guesses about genomic error-correcting codes are made.
引用
收藏
页码:678 / 687
页数:10
相关论文
共 31 条
[1]  
[Anonymous], J BIOSEMIOTICS
[2]  
[Anonymous], OUTLINE INFORM GENET
[3]  
[Anonymous], 2007, Introduction to Biosemiotics: The New Biological Synthesis. Ed
[4]  
[Anonymous], P ISCTA 01 AMBL UK 1
[5]  
[Anonymous], 1986, The Blind Watchmaker
[6]   Long-range correlations between DNA bending sites: Relation to the structure and dynamics of nucleosomes [J].
Audit, B ;
Vaillant, C ;
Arneodo, A ;
d'Aubenton-Carafa, Y ;
Thermes, C .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 316 (04) :903-918
[7]   STUDIES ON THE CHEMICAL NATURE OF THE SUBSTANCE INDUCING TRANSFORMATION OF PNEUMOCOCCAL TYPES INDUCTION OF TRANSFORMATION BY A DESOXYRIBONUCLEIC ACID FRACTION ISOLATED FROM PNEUMOCOCCUS TYPE III [J].
Avery, Oswald T. ;
MacLeod, Colin M. ;
McCarty, Maclyn .
JOURNAL OF EXPERIMENTAL MEDICINE, 1944, 79 (02) :137-158
[8]  
Barbieri M., 2003, ORGANIC CODES
[9]   Biosemiotics: a new understanding of life [J].
Barbieri, Marcello .
NATURWISSENSCHAFTEN, 2008, 95 (07) :577-599
[10]   Should genetics get an information-theoretic education? [J].
Battail, G .
IEEE ENGINEERING IN MEDICINE AND BIOLOGY MAGAZINE, 2006, 25 (01) :34-45