The Einstein Center for Epigenomics: studying the role of epigenomic dysregulation in human disease

被引:1
作者
McLellan, Andrew S. [1 ]
Dubin, Robert A. [1 ]
Jing, Qiang [1 ]
Maqbool, Shahina B. [1 ]
Olea, Raul [1 ]
Westby, Gael [1 ]
Broin, Pilib O. [1 ,2 ]
Fazzari, Melissa J. [1 ]
Zheng, Deyou [1 ]
Suzuki, Masako [1 ]
Greally, John M. [1 ]
机构
[1] Albert Einstein Coll Med, Price Ctr Genet & Translat Med, Bronx, NY 10461 USA
[2] NUI, Natl Ctr Biomed Engn Sci, Galway, Ireland
关键词
bioinformatics; chromatin; cytosine methylation; epigenetics; EXPRESSION; SIGNATURE; PIPELINE; GENES;
D O I
10.2217/EPI.09.9
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
There is increasing interest in the role of epigenetic and transcriptional dysregulation in the pathogenesis of a range of human diseases, not just in the best-studied example of cancer. It is, however, quite difficult for an individual investigator to perform these studies, as they involve genome-wide molecular assays combined with sophisticated computational analytical approaches of very large datasets that may be generated from various resources and technologies. In 2008, the Albert Einstein College of Medicine in New York, USA established a Center for Epigenomics to facilitate the research programs of its investigators, providing shared resources for genome-wide assays and for data analysis. As a result, several avenues of research are now expanding, with cancer epigenomics being complemented by studies of the epigenomics of infectious disease and a neuroepigenomics program.
引用
收藏
页码:33 / 38
页数:6
相关论文
共 20 条
  • [1] Abe M, 2005, CANCER RES, V65, P828
  • [2] Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
    Ball, Madeleine P.
    Li, Jin Billy
    Gao, Yuan
    Lee, Je-Hyuk
    LeProust, Emily M.
    Park, In-Hyun
    Xie, Bin
    Daley, George Q.
    Church, George M.
    [J]. NATURE BIOTECHNOLOGY, 2009, 27 (04) : 361 - 368
  • [3] The mammalian epigenome
    Bernstein, Bradley E.
    Meissner, Alexander
    Lander, Eric S.
    [J]. CELL, 2007, 128 (04) : 669 - 681
  • [4] Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Birney, Ewan
    Stamatoyannopoulos, John A.
    Dutta, Anindya
    Guigo, Roderic
    Gingeras, Thomas R.
    Margulies, Elliott H.
    Weng, Zhiping
    Snyder, Michael
    Dermitzakis, Emmanouil T.
    Stamatoyannopoulos, John A.
    Thurman, Robert E.
    Kuehn, Michael S.
    Taylor, Christopher M.
    Neph, Shane
    Koch, Christoph M.
    Asthana, Saurabh
    Malhotra, Ankit
    Adzhubei, Ivan
    Greenbaum, Jason A.
    Andrews, Robert M.
    Flicek, Paul
    Boyle, Patrick J.
    Cao, Hua
    Carter, Nigel P.
    Clelland, Gayle K.
    Davis, Sean
    Day, Nathan
    Dhami, Pawandeep
    Dillon, Shane C.
    Dorschner, Michael O.
    Fiegler, Heike
    Giresi, Paul G.
    Goldy, Jeff
    Hawrylycz, Michael
    Haydock, Andrew
    Humbert, Richard
    James, Keith D.
    Johnson, Brett E.
    Johnson, Ericka M.
    Frum, Tristan T.
    Rosenzweig, Elizabeth R.
    Karnani, Neerja
    Lee, Kirsten
    Lefebvre, Gregory C.
    Navas, Patrick A.
    Neri, Fidencio
    Parker, Stephen C. J.
    Sabo, Peter J.
    Sandstrom, Richard
    Shafer, Anthony
    [J]. NATURE, 2007, 447 (7146) : 799 - 816
  • [5] Genome-wide epigenetic analysis delineates a biologically distinct immature acute leukemia with myeloid/T-lymphoid features
    Figueroa, Maria E.
    Wouters, Bas J.
    Skrabanek, Lucy
    Glass, Jacob
    Li, Yushan
    Erpelinck-Verschueren, Claudia A. J.
    Langerak, Anton W.
    Lowenberg, Bob
    Fazzari, Melissa
    Greally, John M.
    Valk, Peter J. M.
    Melnick, Ari
    Delwel, Ruud
    [J]. BLOOD, 2009, 113 (12) : 2795 - 2804
  • [6] An Integrative Genomic and Epigenomic Approach for the Study of Transcriptional Regulation
    Figueroa, Maria E.
    Reimers, Mark
    Thompson, Reid F.
    Ye, Kenny
    Li, Yushan
    Selzer, Rebecca R.
    Fridriksson, Jakob
    Paietta, Elisabeth
    Wiernik, Peter
    Green, Roland D.
    Greally, John M.
    Melnick, Ari
    [J]. PLOS ONE, 2008, 3 (03):
  • [7] Ischemic insults promote epigenetic reprogramming of μ opioid receptor expression in hippocampal neurons
    Formisano, Luigi
    Noh, Kyung-Min
    Miyawaki, Takahiro
    Mashiko, Toshihiro
    Bennett, Michael V. L.
    Zukin, R. Suzanne
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (10) : 4170 - 4175
  • [8] GISSOT M, 2008, EUKARYOT CELL
  • [9] Epigenomic modifications predict active promoters and gene structure in Toxoplasma gondii
    Gissot, Mathieu
    Kelly, Krystyna A.
    Ajioka, James W.
    Greally, John M.
    Kim, Kami
    [J]. PLOS PATHOGENS, 2007, 3 (06) : 709 - 719
  • [10] CG dinucleotide clustering is a species-specific property of the genome
    Glass, Jacob L.
    Thompson, Reid F.
    Khulan, Batbayar
    Figueroa, Maria E.
    Olivier, Emmanuel N.
    Oakley, Erin J.
    Van Zant, Gary
    Bouhassira, Eric E.
    Melnick, Ari
    Golden, Aaron
    Fazzari, Melissa J.
    Greally, John M.
    [J]. NUCLEIC ACIDS RESEARCH, 2007, 35 (20) : 6798 - 6807