Update on the epidemiological typing methods for Acinetobacter baumannii

被引:14
作者
Rafei, Rayane [1 ]
Osman, Marwan [1 ]
Dabboussi, Fouad [1 ]
Hamze, Monzer [1 ]
机构
[1] Lebanese Univ, Fac Publ Hlth, Doctoral Sch Sci & Technol, LMSE, Tripoli, Lebanon
关键词
accessory genome; Acinetobacter baumannii; CRISPR-based typing; gene-by-gene based approaches; outbreak; SNP-based approaches; spectroscopic technologies; traditional typing methods; typing; whole genome sequencing; DESORPTION IONIZATION-TIME; INTERLABORATORY REPRODUCIBILITY; MULTIPLEX-PCR; CLONE; RESISTANCE; OUTBREAK; IDENTIFICATION; STRAINS; FUTURE; MECHANISMS;
D O I
10.2217/fmb-2019-0134
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The outstanding ability of Acinetobacter baumannii to cause outbreaks and acquire multidrug resistance motivated the development of a plethora of typing techniques, which can help infection preventionists and hospital epidemiologists to more efficiently implement intervention controls. Nowadays, the world is witnessing a gradual transition from traditional typing methodology to whole genome sequencing-based approaches. Such approaches are opening new prospects and applications never achieved by existing typing methods. Herein, we provide the reader with an updated review on A. baumannii typing methods recapping the added value of well-established techniques previously applied for A. baumannii and detailing new ones (as clustered regularly interspaced short palindromic repeats-based typing) with a special focus on whole genome sequencing.
引用
收藏
页码:1065 / 1080
页数:16
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