The Molecular Basis for Life in Extreme Environments

被引:43
作者
Ando, Nozomi [1 ,2 ]
Barquera, Blanca [3 ]
Bartlett, Douglas H. [4 ]
Boyd, Eric [5 ]
Burnim, Audrey A. [1 ]
Byer, Amanda S. [1 ]
Colman, Daniel [5 ]
Gillilan, Richard E. [6 ]
Gruebele, Martin [7 ,8 ,9 ]
Makhatadze, George [3 ]
Royer, Catherine A. [3 ]
Shock, Everett [10 ]
Wand, A. Joshua [11 ,12 ,13 ]
Watkins, Maxwell B. [1 ,2 ]
机构
[1] Cornell Univ, Dept Chem & Chem Biol, Ithaca, NY 14853 USA
[2] Princeton Univ, Dept Chem, Princeton, NJ 08544 USA
[3] Rensselaer Polytech Inst, Dept Biol Sci, Troy, NY 12180 USA
[4] Univ Calif San Diego, Scripps Inst Oceanog, Div Marine Biol Res, La Jolla, CA 92093 USA
[5] Montana State Univ, Dept Microbiol & Immunol, Bozeman, MT 59717 USA
[6] Ctr High Energy Xray Sci CHEXS, Ithaca, NY 14853 USA
[7] Univ Illinois, Dept Chem, 1209 W Calif St, Urbana, IL 61801 USA
[8] Univ Illinois, Dept Phys, 1110 W Green St, Urbana, IL 61801 USA
[9] Univ Illinois, Ctr Biophys & Quantitat Biol, Urbana, IL 61801 USA
[10] Arizona State Univ, Ctr Fundamental & Appl Microbi, Sch Mol Sci, GEOPIG,Sch Earth & Space Explorat, Tempe, AZ 85287 USA
[11] Texas A&M Univ, Dept Biochem & Biophys, College Stn, TX 77845 USA
[12] Texas A&M Univ, Dept Chem, College Stn, TX 77845 USA
[13] Texas A&M Univ, Dept Mol & Cellular Med, College Stn, TX 77845 USA
来源
ANNUAL REVIEW OF BIOPHYSICS, VOL 50, 2021 | 2021年 / 50卷
基金
美国国家科学基金会;
关键词
extreme environments; extremophiles; proteins; energetics; adaptation; instrumentation; PRESSURE PERTURBATION CALORIMETRY; DISSIMILATORY SULFITE REDUCTASE; NUCLEAR-MAGNETIC-RESONANCE; HIGH HYDROSTATIC-PRESSURE; RAY-SCATTERING CELL; HIGH-RESOLUTION; SP NOV; 3-ISOPROPYLMALATE DEHYDROGENASE; THERMOPHILIC PROTEINS; VOLUMETRIC PROPERTIES;
D O I
10.1146/annurev-biophys-100120-072804
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Sampling and genomic efforts over the past decade have revealed an enormous quantity and diversity of life in Earth's extreme environments. This new knowledge of life on Earth poses the challenge of understanding its molecular basis in such inhospitable conditions, given that such conditions lead to loss of structure and of function in biomolecules from mesophiles. In this review, we discuss the physicochemical properties of extreme environments. We present the state of recent progress in extreme environmental genomics. We then present an overview of our current understanding of the biomolecular adaptation to extreme conditions. As our current and future understanding of biomolecular structure-function relationships in extremophiles requires methodologies adapted to extremes of pressure, temperature, and chemical composition, advances in instrumentation for probing biophysical properties under extreme conditions are presented. Finally, we briefly discuss possible future directions in extreme biophysics.
引用
收藏
页码:343 / 372
页数:30
相关论文
共 170 条
[1]   Influence of cosolvents, self-crowding, temperature and pressure on the sub-nanosecond dynamics and folding stability of lysozyme [J].
Al-Ayoubi, S. R. ;
Schummel, P. H. ;
Golub, M. ;
Peters, J. ;
Winter, R. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2017, 19 (22) :14230-14237
[2]  
Allen EE, 1999, APPL ENVIRON MICROB, V65, P1710
[3]   High hydrostatic pressure small-angle X-ray scattering cell for protein solution studies featuring diamond windows and disposable sample cells [J].
Ando, Nozomi ;
Chenevier, Pascale ;
Novak, Martin ;
Tate, Mark W. ;
Gruner, Sol M. .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2008, 41 :167-175
[4]   Thermophiles and the applications of their enzymes as new biocatalysts [J].
Atalah, Joaquin ;
Caceres-Moreno, Paulina ;
Espina, Giannina ;
Blamey, Jenny M. .
BIORESOURCE TECHNOLOGY, 2019, 280 :478-488
[5]   Protein adaptation to high hydrostatic pressure: Computational analysis of the structural proteome [J].
Avagyan, Samvel ;
Vasilchuk, Daniel ;
Makhatadze, George I. .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2020, 88 (04) :584-592
[6]   Live-Cell Imaging and Measurement of Intracellular pH in Filamentous Fungi Using a Genetically Encoded Ratiometric Probe [J].
Bagar, Tanja ;
Altenbach, Kirsten ;
Read, Nick D. ;
Bencina, Mojca .
EUKARYOTIC CELL, 2009, 8 (05) :703-712
[7]   Life in acid: pH homelostasis in acidophiles [J].
Baker-Austin, Craig ;
Dopson, Mark .
TRENDS IN MICROBIOLOGY, 2007, 15 (04) :165-171
[8]   The biomass distribution on Earth [J].
Bar-On, Yinon M. ;
Phillips, Rob ;
Milo, Ron .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (25) :6506-6511
[9]   Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift [J].
Barstow, Buz ;
Ando, Nozomi ;
Kim, Chae Un ;
Gruner, Sol M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (36) :13362-13366
[10]   NUCLEAR MAGNETIC RESONANCE IN LIQUIDS UNDER HIGH PRESSURE [J].
BENEDEK, GB ;
PURCELL, EM .
JOURNAL OF CHEMICAL PHYSICS, 1954, 22 (12) :2003-2012