Research on Parallel F-statistics estimation algorithm based on OpenMP

被引：0
|
作者：
Jing, Rinqing [1 ]
Lu, Jun [1 ,2 ]
Li, Jun [1 ]
Wan, Kang [1 ]
Zhang, Haoyu [1 ,2 ]
机构：
[1] Heilongjiang Univ, Coll Comp Sci & Technol, Harbin, Peoples R China
[2] Key Lab Database & Parallel Comp Heilongjiang Pro, Harbin, Peoples R China
来源：
2015 IEEE ADVANCED INFORMATION TECHNOLOGY, ELECTRONIC AND AUTOMATION CONTROL CONFERENCE (IAEAC) | 2015年
关键词：
F-statistics; OpenMP; population differentiation; variation site;
D O I：
暂无
中图分类号：
TP [自动化技术、计算机技术];
学科分类号：
0812 ;
摘要：
The genetic variation information file of glycine max is adopted as experimental data in this paper. The genetic variation information of soybean is processed and the corresponding algorithm is paralleled by the OpenMP parallel technology. The experiment extracted the corresponding biologic information of population individuals from genetic variation information, implemented corresponding process and calculation. The relevant serial algorithm and parallel algorithm are compared and analyzed. The experiment results show that the efficiency of the data processing and analysis of F statistic are effectively improved by OpenMP parallel technology[1]. It has actual significance on processing massive bioinformatic data.
引用
收藏
页码：962 / 965
页数：4
相关论文
共 50 条
  • [21] A Parallel Algorithm Based On OpenMP plus STM for FPGA Timing-Driven Placement
    Zhang, Jia-qi
    Lv, Hui-juan
    Tan, Li-bo
    Pan, Tao-tao
    COMPUTER SCIENCE AND TECHNOLOGY (CST2016), 2017, : 1185 - 1193
  • [22] An Automatic Parallel-Stage Decoupled Software Pipelining Parallelization Algorithm Based on OpenMP
    Liu, Xiaoxian
    Zhao, Rongcai
    Han, Lin
    Liu, Peng
    2013 12TH IEEE INTERNATIONAL CONFERENCE ON TRUST, SECURITY AND PRIVACY IN COMPUTING AND COMMUNICATIONS (TRUSTCOM 2013), 2013, : 1825 - 1831
  • [23] An Enhanced Parallel Version of RSA Public Key Crypto Based Algorithm Using OpenMP
    Saxena, Rahul
    Jain, Monika
    Singh, Dushyant
    Kushwah, Ashutosh
    SIN'17: PROCEEDINGS OF THE 10TH INTERNATIONAL CONFERENCE ON SECURITY OF INFORMATION AND NETWORKS, 2017, : 37 - 42
  • [24] Research on Air Combat Parallel Simulation System Based on OpenMP and Windows Multithreading API
    Li Bo
    Liu Xue-quan
    Zhang Bo
    PROCEEDINGS OF THE 2012 SECOND INTERNATIONAL CONFERENCE ON INSTRUMENTATION & MEASUREMENT, COMPUTER, COMMUNICATION AND CONTROL (IMCCC 2012), 2012, : 230 - 233
  • [25] OpenMP Parallel Optimal Path Algorithm and Its Performance Analysis
    Cao, Han
    Wang, Fei
    Fang, Xin
    Tu, Hong-lei
    Shi, Jun
    2009 WRI WORLD CONGRESS ON SOFTWARE ENGINEERING, VOL 1, PROCEEDINGS, 2009, : 61 - +
  • [26] Parallel Cube Reconstruction of HSI Based on OpenMP
    Cui, Deqi
    Liao, Ningfang
    Zhao, Xiang
    Cao, Weiliang
    Lin, Yu
    Tan, Boneng
    2009 ISECS INTERNATIONAL COLLOQUIUM ON COMPUTING, COMMUNICATION, CONTROL, AND MANAGEMENT, VOL II, 2009, : 188 - +
  • [27] Parallel Cuckoo Search Algorithm on OpenMP for Traveling Salesman Problem
    Ng Tzy-Luen
    Keat, Yeow Teck
    Abdullah, Rosni
    2016 3RD INTERNATIONAL CONFERENCE ON COMPUTER AND INFORMATION SCIENCES (ICCOINS), 2016, : 380 - 385
  • [28] Parallel Contingency Analysis Solution based on OpenMP
    Dong, Feng
    Xu, Xiatian
    Zhang, Xu
    2014 NORTH AMERICAN POWER SYMPOSIUM (NAPS), 2014,
  • [29] A Parallel Aho-Corasick Algorithm with Non-deterministic Finite Automaton Based on OpenMP
    Qu, Jiaxing
    Zhang, Guoyin
    Fang, Zhou
    Liu, Jiahui
    Liu, Xinyu
    Li, Fangzhou
    2015 SEVENTH INTERNATIONAL CONFERENCE ON ADVANCED COMMUNICATION AND NETWORKING (ACN), 2015, : 52 - 55
  • [30] Designing a parallel algorithm for Heat Conduction using MPI, OpenMP and CUDA
    Sivanandan, Vinaya
    Kumar, Vikas
    Meher, Srisai
    2015 IEEE INTERNATIONAL CONFERENCE ON MICROELECTRONICS SYSTEMS EDUCATION (MSE), 2015,
12345