A non-uniformly sampled 4D HCC(CO)NH-TOCSY experiment processed using maximum entropy for rapid protein sidechain assignment

被引:48
|
作者
Mobli, Mehdi [1 ]
Stern, Alan S. [2 ]
Bermel, Wolfgang [3 ]
King, Glenn F. [1 ]
Hoch, Jeffrey C. [4 ]
机构
[1] Univ Queensland, Inst Mol Biosci, St Lucia, Qld 4072, Australia
[2] Harvard Univ, Rowland Inst, Cambridge, MA 02142 USA
[3] Bruker BioSpin GmbH, D-76287 Rheinstetten, Germany
[4] Univ Connecticut, Ctr Hlth, Farmington, CT 06030 USA
基金
澳大利亚研究理事会; 美国国家卫生研究院;
关键词
Multidimensional NMR; Heteronuclear NMR; HCC(CO)NH-TOCSY; Maximum entropy; Non-uniform sampling; Protein assignment; NMR-SPECTROSCOPY; SPECTRAL RECONSTRUCTION; C-13/N-15-ENRICHED PROTEINS; RESONANCE; DECOMPOSITION; EXCITATION; TRANSFORM;
D O I
10.1016/j.jmr.2010.02.012
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
One of the stiffest challenges in structural studies of proteins using NMR is the assignment of sidechain resonances. Typically, a panel of lengthy 3D experiments are acquired in order to establish connectivities and resolve ambiguities due to overlap. We demonstrate that these experiments can be replaced by a single 4D experiment that is time-efficient, yields excellent resolution, and captures unique carbon-proton connectivity information. The approach is made practical by the use of non-uniform sampling in the three indirect time dimensions and maximum entropy reconstruction of the corresponding 3D frequency spectrum. This 4D method will facilitate automated resonance assignment procedures and it should be particularly beneficial for increasing throughput in NMR-based structural genomics initiatives. (C) 2010 Elsevier Inc. All rights reserved.
引用
收藏
页码:160 / 164
页数:5
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