Comparison of logistic regression and neural network-based classifiers for bacterial growth

被引:75
作者
Hajmeer, M
Basheer, I
机构
[1] Univ Calif Davis, Dept Populat Hlth & Reprod, Sch Vet Med, Davis, CA 95616 USA
[2] Dept Transportat, Sacramento, CA 95819 USA
关键词
classifiers; bacterial growth; logistic regression;
D O I
10.1016/S0740-0020(02)00104-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
In this paper, we introduce two fundamentally different approaches for designing classification models (classifiers); the traditional statistical method based on logistic regression and the emerging computationally powerful techniques based on artificial neural networks (ANNs). Linear and nonlinear logistic regression as well as feedforward error backpropagation artificial neural networks (FEBANN) and probabilistic neural networks (PNN) based classifiers were developed and compared in relation to their accuracy in classification of bacterial growth/no-growth data pertaining to pathogenic Escherichia coli R31 as affected by temperature and water activity. The comparisons between the four developed classifiers were primarily based on analysis of the receiver operating characteristic (ROC) curves as well as a number of scalar performance measures pertaining to the classification contingency matrices. The ANN-based classifiers outperformed the logistic regression based counterparts. Within the same group, the PNN-based classifier was more accurate than the FEBANN-based classifier, and the nonlinear logistic regression-based classifier was more accurate than the linear one. The optimal PNN-based classifier was a perfect classifier with 100% growth detection accuracy and zero false alarm rate. The advantages and limitations pertaining to the development of the various classifiers were discussed. (C) 2002 Elsevier Science Ltd. All rights reserved.
引用
收藏
页码:43 / 55
页数:13
相关论文
共 22 条
[1]  
Agresti A., 1996, INTRO CATEGORICAL DA
[2]   Predictive non-linear modeling of complex data by artificial neural networks [J].
Almeida, JS .
CURRENT OPINION IN BIOTECHNOLOGY, 2002, 13 (01) :72-76
[3]   Artificial neural networks: fundamentals, computing, design, and application [J].
Basheer, IA ;
Hajmeer, M .
JOURNAL OF MICROBIOLOGICAL METHODS, 2000, 43 (01) :3-31
[4]   ESTIMATION OF A MULTIVARIATE DENSITY [J].
CACOULLOS, T .
ANNALS OF THE INSTITUTE OF STATISTICAL MATHEMATICS, 1966, 18 (02) :179-+
[5]   Application of artificial neural networks as a non-linear modular modeling technique to describe bacterial growth in chilled food products [J].
Geeraerd, AH ;
Herremans, CH ;
Cenens, C ;
Van Impe, JF .
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 1998, 44 (1-2) :49-68
[6]   Nonlinear response surface model based on artificial neural networks for growth of Saccharomyces cerevisiae [J].
Hajmeer, MN ;
Basheer, IA ;
Fung, DYC ;
Marsden, JL .
JOURNAL OF RAPID METHODS AND AUTOMATION IN MICROBIOLOGY, 1998, 6 (02) :103-118
[7]   New approach for modeling generalized microbial growth curves using artificial neural networks [J].
Hajmeer, MN ;
Basheer, IA ;
Marsden, JL ;
Fung, DYC .
JOURNAL OF RAPID METHODS AND AUTOMATION IN MICROBIOLOGY, 2000, 8 (04) :265-283
[8]   Computational neural networks for predictive microbiology .2. Application to microbial growth [J].
Hajmeer, MN ;
Basheer, IA ;
Najjar, YM .
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 1997, 34 (01) :51-66
[9]  
HAJMEER MN, 1996, INTELLIGENT ENG SYST, V6, P635
[10]  
Hosmer D. W., 1989, APPL LOGISTIC REGRES, DOI DOI 10.1097/00019514-200604000-00003