Epigenetic Changes in Chronic Inflammatory Diseases

被引:43
作者
Fogel, O. [1 ,2 ]
Richard-Miceli, C. [1 ,3 ]
Tost, J. [2 ]
机构
[1] Univ Paris 05, Hop Cochin, Assistance Publ Hop Paris, EULAR Ctr Excellence, Paris, France
[2] CEA, Inst Genom, Ctr Natl Genotypage, Lab Epigenet & Environm, Evry, France
[3] Inst Pasteur, Immunoregulat Unit, Unite Mixte Pasteur, APHP, Paris, France
来源
CHROMATIN REMODELLING AND IMMUNITY | 2017年 / 106卷
关键词
WIDE DNA METHYLATION; HISTONE DEACETYLASE INHIBITORS; ULCERATIVE-COLITIS; CROHNS-DISEASE; BOWEL-DISEASE; CPG SITES; T-CELLS; MACROPHAGE POLARIZATION; ANKYLOSING-SPONDYLITIS; PROMOTER METHYLATION;
D O I
10.1016/bs.apcsb.2016.09.003
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The number of people diagnosed with chronic inflammatory diseases has increased noteworthy in the last 40 years. Spondyloarthritis (SpA), inflammatory bowel diseases (IBD), and psoriasis are the most frequent chronic inflammatory diseases, resulting from a combination of genetic predisposition and environmental factors. Epigenetic modifications include DNA methylation, histone modifications, and small and long non-coding RNAs. They are influenced by environmental exposure, life-style, and aging and have recently been shown to be altered in many complex diseases including inflammatory diseases. While epigenetic modifications have been well characterized in other diseases such as cancer and autoimmune diseases, knowledge on changes in inflammatory diseases is lagging behind with some disease-specific differences. While the DNA methylation profile of different cell types in patients with IBD has been relatively well described, less is known on changes implicated in psoriasis, and no systematic genome-wide studies have so far been performed in SpA. In this chapter, we review in detail the reported changes in patterns of DNA methylation and posttranslational histone modifications in chronic inflammatory diseases highlighting potential connections between disease-associated pathophysiological changes such as the dysbiosis of the microbiome or genetic variations associated with disease susceptibility and the epigenome. We also discuss important parameters of meaningful epigenetic studies such as the use of well defined, disease-relevant cell populations, and elude on the potential future of engineering of the epigenome in inflammatory diseases.
引用
收藏
页码:139 / 189
页数:51
相关论文
共 194 条
[21]   DNA methylation patterns and epigenetic memory [J].
Bird, A .
GENES & DEVELOPMENT, 2002, 16 (01) :6-21
[22]   Death in the intestinal epithelium-basic biology and implications for inflammatory bowel disease [J].
Blander, J. Magarian .
FEBS JOURNAL, 2016, 283 (14) :2720-2730
[23]   Quantitative comparison of DNA methylation assays for biomarker development and clinical applications [J].
Bock, Christoph ;
Halbritter, Florian ;
Carmona, Francisco J. ;
Tierling, Sascha ;
Datlinger, Paul ;
Assenov, Yassen ;
Berdasco, Maria ;
Bergmann, Anke K. ;
Booher, Keith ;
Busato, Florence ;
Campan, Mihaela ;
Dahl, Christina ;
Dahmcke, Christina M. ;
Diep, Dinh ;
Fernandez, Agustin F. ;
Gerhauser, Clarissa ;
Haake, Andrea ;
Heilmann, Katharina ;
Holcomb, Thomas ;
Hussmann, Dianna ;
Ito, Mitsuteru ;
Klaever, Ruth ;
Kreutz, Martin ;
Kulis, Marta ;
Lopez, Virginia ;
Nair, Shalima S. ;
Paul, Dirk S. ;
Plongthongkum, Nongluk ;
Qu, Wenjia ;
Queiros, Ana C. ;
Reinicke, Frank ;
Sauter, Guido ;
Schlomm, Thorsten ;
Statham, Aaron ;
Stirzaker, Clare ;
Strogantsev, Ruslan ;
Urdinguio, Rocio G. ;
Walter, Kimberly ;
Weichenhan, Dieter ;
Weisenberger, Daniel J. ;
Beck, Stephan ;
Clark, Susan J. ;
Esteller, Manel ;
Ferguson-Smith, Anne C. ;
Fraga, Mario F. ;
Guldberg, Per ;
Hansen, Lise Lotte ;
Laird, Peter W. ;
Martin-Subero, Jose I. ;
Nygren, Anders O. H. .
NATURE BIOTECHNOLOGY, 2016, 34 (07) :726-+
[24]   Quantitative comparison of genome-wide DNA methylation mapping technologies [J].
Bock, Christoph ;
Tomazou, Eleni M. ;
Brinkman, Arie B. ;
Mueller, Fabian ;
Simmer, Femke ;
Gu, Hongcang ;
Jaeger, Natalie ;
Gnirke, Andreas ;
Stunnenberg, Hendrik G. ;
Meissner, Alexander .
NATURE BIOTECHNOLOGY, 2010, 28 (10) :1106-U196
[25]   Genome-wide DNA Methylation Events in TMPRSS2-ERG Fusion-Negative Prostate Cancers Implicate an EZH2-Dependent Mechanism with miR-26a Hypermethylation [J].
Boerno, Stefan T. ;
Fischer, Axel ;
Kerick, Martin ;
Faelth, Maria ;
Laible, Mark ;
Brase, Jan C. ;
Kuner, Ruprecht ;
Dahl, Andreas ;
Grimm, Christina ;
Sayanjali, Behnam ;
Isau, Melanie ;
Roehr, Christina ;
Wunderlich, Andrea ;
Timmermann, Bernd ;
Claus, Rainer ;
Plass, Christoph ;
Graefen, Markus ;
Simon, Ronald ;
Demichelis, Francesca ;
Rubin, Mark A. ;
Sauter, Guido ;
Schlomm, Thorsten ;
Sueltmann, Holger ;
Lehrach, Hans ;
Schweiger, Michal R. .
CANCER DISCOVERY, 2012, 2 (11) :1024-1035
[26]   The genetics of psoriasis and autommunity [J].
Bowcock, AM .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2005, 6 :93-122
[27]  
Brandtzaeg P, 2006, ADV EXP MED BIOL, V579, P149
[28]   Update on mucosal immunoglobulin A in gastrointestinal disease [J].
Brandtzaeg, Per .
CURRENT OPINION IN GASTROENTEROLOGY, 2010, 26 (06) :554-563
[29]   Whole-genome DNA methylation profiling using MethylCap-seq [J].
Brinkman, Arie B. ;
Simmer, Femke ;
Ma, Kelong ;
Kaan, Anita ;
Zhu, Jingde ;
Stunnenberg, Hendrik G. .
METHODS, 2010, 52 (03) :232-236
[30]   Genome-Scale Screen for DNA Methylation-Based Detection Markers for Ovarian Cancer [J].
Campan, Mihaela ;
Moffitt, Melissa ;
Houshdaran, Sahar ;
Shen, Hui ;
Widschwendter, Martin ;
Daxenbichler, Guenter ;
Long, Tiffany ;
Marth, Christian ;
Laird-Offringa, Ite A. ;
Press, Michael F. ;
Dubeau, Louis ;
Siegmund, Kimberly D. ;
Wu, Anna H. ;
Groshen, Susan ;
Chandavarkar, Uma ;
Roman, Lynda D. ;
Berchuck, Andrew ;
Pearce, Celeste L. ;
Laird, Peter W. .
PLOS ONE, 2011, 6 (12)