Monogenic Childhood Diabetes: Dissecting Clinical Heterogeneity by Next-Generation Sequencing in Maturity-Onset Diabetes of the Young

被引:18
作者
Demirci, Deniz Kanca [1 ,2 ]
Darendeliler, Feyza [3 ]
Poyrazoglu, Sukran [3 ]
Al, Asli Derya Kardelen [3 ]
Gul, Nurdan [4 ]
Tutuncu, Yildiz [4 ,5 ]
Gulfidan, Gizem [6 ]
Arga, Kazim Yalcin [6 ,7 ]
Cacina, Canan [2 ]
Ozturk, Oguz [2 ]
Aydogan, Hulya Yilmaz [2 ]
Satman, Ilhan [4 ,7 ]
机构
[1] Halic Univ, Fac Arts & Sci, Dept Mol Biol & Genet, Istanbul, Turkey
[2] Istanbul Univ, Aziz Sancar Inst Expt Med, Dept Mol Med, Istanbul, Turkey
[3] Istanbul Univ, Istanbul Fac Med, Dept Pediat, Pediat Endocrinol Unit, Istanbul, Turkey
[4] Istanbul Univ, Istanbul Fac Med, Dept Internal Med, Div Endocrinol & Metab, Turgut Ozal Millet Caddesi, TR-34093 Istanbul, Turkey
[5] Koc Univ, Sch Med, Dept Immunol, KUTTAM, Istanbul, Turkey
[6] Marmara Univ, Fac Engn, Dept Bioengn, Istanbul, Turkey
[7] Hlth Inst Turkey, Inst Publ Hlth & Chron Dis, Istanbul, Turkey
关键词
monogenic diabetes; maturity-onset diabetes of the young; MODY; next-generation sequencing; personalized medicine; human genetics; HEPATOCYTE NUCLEAR FACTOR-1-BETA; COMMON-CAUSE; RARE CAUSE; MUTATIONS; GENE; TYPE-2; MODY; IDENTIFICATION; KIR6.2; ALPHA;
D O I
10.1089/omi.2021.0081
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Diabetes is a common disorder with a heterogeneous clinical presentation and an enormous burden on health care worldwide. About 1-6% of patients with diabetes suffer from maturity-onset diabetes of the young (MODY), the most common form of monogenic diabetes with autosomal dominant inheritance. MODY is genetically and clinically heterogeneous and caused by genetic variations in pancreatic beta-cell development and insulin secretion. We report here new findings from targeted next-generation sequencing (NGS) of 13 MODY-related genes. A sample of 22 unrelated pediatric patients with MODY and 13 unrelated healthy controls were recruited from a Turkish population. Targeted NGS was performed with Miseq 4000 (Illumina) to identify genetic variations in 13 MODY-related genes: HNF4A, GCK, HNF1A, PDX1, HNF1B, NEUROD1, KLF11, CEL, PAX4, INS, BLK, ABCC8, and KCNJ11. The NGS data were analyzed adhering to the Genome Analysis ToolKit (GATK) best practices pipeline, and variant filtering and annotation were performed. In the patient sample, we identified 43 MODY-specific genetic variations that were not present in the control group, including 11 missense mutations and 4 synonymous mutations. Importantly, and to the best of our knowledge, the missense mutations NEUROD1 p.D202E, KFL11 p.R461Q, BLK p.G248R, and KCNJ11 p.S385F were first associated with MODY in the present study. These findings contribute to the worldwide knowledge base on MODY and molecular correlates of clinical heterogeneity in monogenic childhood diabetes. Further comparative population genetics and functional genomics studies are called for, with an eye to discovery of novel diagnostics and personalized medicine in MODY. Because MODY is often misdiagnosed as type 1 or type 2 diabetes mellitus, advances in MODY diagnostics with NGS stand to benefit diabetes overall clinical care as well.
引用
收藏
页码:431 / 449
页数:19
相关论文
共 87 条
[1]   Identification of the First PAX4-MODY Family Reported in Brazil [J].
Abreu, Gabriella de Medeiros ;
Pereira, Camila de Almeida ;
Soares, Dias ;
Tarantino, Roberta Magalhaes ;
Proenca da Fonseca, Ana Carolina ;
de Souza, Ritiele Bastos ;
Carvalho Pereira, Maria de Fatima ;
Cabello, Pedro Hernan ;
Rodacki, Melanie ;
Zajdenverg, Lenita ;
Zembrzuski, Veronica Marques ;
Campos Junior, Mario .
DIABETES METABOLIC SYNDROME AND OBESITY-TARGETS AND THERAPY, 2020, 13 :2623-2631
[2]   A method and server for predicting damaging missense mutations [J].
Adzhubei, Ivan A. ;
Schmidt, Steffen ;
Peshkin, Leonid ;
Ramensky, Vasily E. ;
Gerasimova, Anna ;
Bork, Peer ;
Kondrashov, Alexey S. ;
Sunyaev, Shamil R. .
NATURE METHODS, 2010, 7 (04) :248-249
[3]   Maturity onset diabetes of youth (MODY) in Turkish children: sequence analysis of 11 causative genes by next generation sequencing [J].
Agladioglu, Sebahat Yilmaz ;
Aycan, Zehra ;
Cetinkaya, Semra ;
Bas, Veysel Nijat ;
Onder, Asan ;
Kendirci, Havva Nur Peltek ;
Dogan, Haldun ;
Ceylaner, Serdar .
JOURNAL OF PEDIATRIC ENDOCRINOLOGY & METABOLISM, 2016, 29 (04) :487-496
[4]   Human Pancreatic β Cell lncRNAs Control Cell-Specific Regulatory Networks [J].
Akerman, Ildem ;
Tu, Zhidong ;
Beucher, Anthony ;
Rolando, Delphine M. Y. ;
Sauty-Colace, Claire ;
Benazra, Marion ;
Nakic, Nikolina ;
Yang, Jialiang ;
Wang, Huan ;
Pasquali, Lorenzo ;
Moran, Ignasi ;
Garcia-Hurtado, Javier ;
Castro, Natalia ;
Gonzalez-Franco, Roser ;
Stewart, Andrew F. ;
Bonner, Caroline ;
Piemonti, Lorenzo ;
Berney, Thierry ;
Groop, Leif ;
Kerr-Conte, Julie ;
Pattou, Francois ;
Argmann, Carmen ;
Schadt, Eric ;
Ravassard, Philippe ;
Ferrer, Jorge .
CELL METABOLISM, 2017, 25 (02) :400-411
[5]   An integrated map of genetic variation from 1,092 human genomes [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Schmidt, Jeanette P. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Dinh, Huyen ;
Kovar, Christie ;
Lee, Sandra ;
Lewis, Lora ;
Muzny, Donna ;
Reid, Jeff ;
Wang, Min ;
Wang, Jun ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Li, Zhuo ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Su, Zhe ;
Tai, Shuaishuai ;
Tang, Meifang .
NATURE, 2012, 491 (7422) :56-65
[6]  
[Anonymous], 2002, NCBI HDB
[7]  
[Anonymous], 2014, NHLBI TRANSOMICS PRE
[8]   Analysis of the GCK gene in 79 MODY type 2 patients: A multicenter Turkish study, mutation profile and description of twenty novel mutations [J].
Aykut, Ayca ;
Karaca, Emin ;
Onay, Huseyin ;
Goksen, Damla ;
Cetinkalp, Sevki ;
Eren, Erdal ;
Ersoy, Betul ;
Cakir, Esra Papatya ;
Buyukinan, Muammer ;
Kara, Cengiz ;
Anik, Ahmet ;
Kirel, Birgul ;
Ozen, Samim ;
Atik, Tahir ;
Darcan, Sukran ;
Ozkinay, Ferda .
GENE, 2018, 641 :186-189
[9]   Clinical spectrum associated with hepatocyte nuclear factor-1β mutations [J].
Bellanné-Chantelot, C ;
Chauveau, D ;
Gautier, JF ;
Dubois-Laforgue, D ;
Clauin, S ;
Beaufils, S ;
Wilhelm, JM ;
Boitard, C ;
Noël, LH ;
Velho, G ;
Timsit, J .
ANNALS OF INTERNAL MEDICINE, 2004, 140 (07) :510-517
[10]   Large genomic Rearrangements in the hepatocyte nuclear factor-1β (TCF2) gene are the most frequent cause of maturity-onset diabetes of the young type 5 [J].
Bellanné-Chantelot, C ;
Clauin, S ;
Chauveau, D ;
Collin, P ;
Daumont, M ;
Douillard, C ;
Dubois-Laforgue, D ;
Dusselier, L ;
Gautier, JF ;
Jadoul, M ;
Laloi-Michelin, M ;
Jacquesson, L ;
Larger, E ;
Louis, J ;
Nicolino, M ;
Subra, JF ;
Wilhem, JM ;
Young, J ;
Velho, G ;
Timsit, J .
DIABETES, 2005, 54 (11) :3126-3132