The complete chloroplast genome sequences of Barnardia japonica (Thunb.) Schult. and Schult.f

被引：2

作者：

Wang, Rui-Hong ^{[1
,2
]}

Gao, Jing ^{[1
,2
]}

Li, Mengdi ^{[1
,2
]}

Wu, Xue ^{[1
,2
]}

Shen, Chao ^{[1
,2
]}

Wu, Junjie ^{[1
,2
]}

Qi, Zhe-Chen ^{[1
,2
]}

Li, Pan ^{[3
,4
]}

机构：

[1] Zhejiang Sci Tech Univ, Coll Life Sci, Hangzhou 310018, Zhejiang, Peoples R China

[2] Zhejiang Prov Key Lab Plant Secondary Metab & Reg, Hangzhou, Zhejiang, Peoples R China

[3] Zhejiang Univ, Coll Life Sci, Minist Educ, Key Lab Conservat Biol Endangered Wildlife, Hangzhou 310058, Zhejiang, Peoples R China

[4] Zhejiang Univ, Coll Life Sci, Lab Systemat & Evolutionary Bot & Biodivers, Hangzhou 310058, Zhejiang, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 02期

基金：

中国国家自然科学基金;

关键词：

Asparagaceae; Barnardia; chloroplast genome; phylogenomics;

D O I：

10.1080/23802359.2018.1481790

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Barnardia japonica is an ornamental bulb with important medicinal usage. The complete chloroplast genome of B. japonica was newly sequenced in this study. The total chloroplast genome size of B. japonica was 156,129 bp. In total, 131 genes were identified, including 85 protein-coding genes, 8 rRNA genes, and 38 tRNA genes. Eighteen genes are containing introns (clpP and ycf3 contained two introns) and 18 genes had two copies. The overall GC content of this genome was 37.7%. A further phylogenomic analysis of Asparagales, including 36 taxa, was conducted for the placement of genus Barnardia. The complete plastome of B. japonica will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies in the genus and family.

引用

页码：697 / 698

页数：2

共 9 条

[1] Inferences of biogeographical histories within subfamily Hyacinthoideae using S-DIVA and Bayesian binary MCMC analysis implemented in RASP (Reconstruct Ancestral State in Phylogenies)
Ali, Syed Shujait
Yu, Yan
Pfosser, Martin
Wetschnig, Wolfgang
[J]. ANNALS OF BOTANY, 2012, 109 (01) : 95 - 107
[2] Byng JW, 2016, BOT J LINN SOC, V181, P1, DOI [10.1111/boj.12385, 10.1111/j.1095-8339.2009.00996.x]
[3] Chang L., 2017, IDENTIFICATION CONTR, V3, P835
[4] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Katoh, Kazutaka
Standley, Daron M.
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
[5] Kayiran SD, 2017, INDIAN J TRADIT KNOW, V16, P243
[6] Miller MA., 2010, Proceedings of the Gateway Computing Environments Workshop (GCE), V2010, P1, DOI DOI 10.1109/GCE.2010.5676129
[7] The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
Schattner, P
Brooks, AN
Lowe, TM
[J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : W686 - W689
[8] RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Stamatakis, Alexandros
[J]. BIOINFORMATICS, 2014, 30 (09) : 1312 - 1313
[9] GeSeq - versatile and accurate annotation of organelle genomes
Tillich, Michael
Lehwark, Pascal
Pellizzer, Tommaso
Ulbricht-Jones, Elena S.
Fischer, Axel
Bock, Ralph
Greiner, Stephan
[J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) : W6 - W11

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