The unsteady effect of aerodynamics is inadequately considered in the evaluation of performance of Flight Control System (FCS) using traditional engineering technique based on the aerodynamic model or database. To improve the evaluation accuracy, especially for the strong unsteady effect of aerodynamics, the coupling simulation technique of PID (Proportional-Integral-Differential) controller, CFD (Computational Fluid Dynamics) and RBD (Rigid Body Dynamics) is founded. The aerodynamic model in engineering technique is instead by the real-time unsteady aerodynamic forces moments in the new coupled technique including unsteady effect of aerodynamics induced by motion of vehicle and deflection of aileron. Therefore, the evaluation accuracy of flight control system can be improved. The control process in roll on a square cross section vehicle is carried out using the engineering technique and the coupled technique, and the study shows that, the simulation results with different method correspond well with each other at slow maneuver condition where unsteady effect of aerodynamics is weak. However, the time lag of FCS using engineering technique is much smaller than that using coupled technique at rapid maneuver state, i.e. the time lag of the FCS may be underestimated with traditional method. This indicates the necessity of the coupled technique in the evaluation of FCS for strong unsteady effect state such as high angle of attack or rapid maneuver. (C) 2017 Elsevier B.V. All rights reserved.