BDB: Databank of PDB files with consistent B-factors

被引:22
作者
Touw, Wouter G. [1 ]
Vriend, Gert [1 ]
机构
[1] Radboud Univ Nijmegen, Med Ctr, CMBI, NL-6525 GA Nijmegen, Netherlands
关键词
ADP; B-factor; PDB-derived databank; protein engineering resource; TLS; PROTEIN-BINDING-SITES; DISPLACEMENT PARAMETERS; STRUCTURE REFINEMENT; THERMAL-STABILITY; MACROMOLECULAR STRUCTURES; TEMPERATURE FACTOR; HEN LYSOZYME; FLEXIBILITY; PREDICTION; DYNAMICS;
D O I
10.1093/protein/gzu044
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Protein structures available from the PDB contain for each atom the coordinates, the occupancy and the B-factor that indicates the mobility of the atom. The values that should represent B-factors can relate to atomic motions in different ways. We present here a databank in which all B-factors have been converted to the one, homogeneous representation that is most useful for protein engineering applications. The Databank of PDB files with consistent B-factors (BDB) is freely available through .
引用
收藏
页码:457 / 462
页数:6
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