Paenibacillus sabuli sp. nov., isolated from the South China Sea

被引:2
作者
Gao, Qi-Jie [1 ,2 ,3 ]
Mo, Kun-Lian [2 ,3 ]
Hu, Yong-Hua [2 ,3 ,4 ]
Liu, Zhi-Yuan [1 ]
Huang, Hui-Qin [2 ,3 ]
机构
[1] Hainan Univ, Coll Marine Sci, Haikou 570228, Hainan, Peoples R China
[2] Hainan Acad Trop Agr Resource, Inst Trop Biosci & Biotechnol, CATAS, Haikou 571101, Hainan, Peoples R China
[3] Hainan Prov Key Lab Funct Components Res & Utiliz, Haikou 571101, Hainan, Peoples R China
[4] Pilot Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266071, Peoples R China
关键词
coastal sand; Paenibacillus sabuli sp. nov; polyphasic taxonomy; 16S rRNA gene; DNA; TAXONOMY; GENES;
D O I
10.1099/ijsem.0.005568
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-positive, rod-shaped, motile, spore-forming bacterium, designated strain IB182496T, was isolated from coastal sand of the South China Sea. The strain grew optimally at pH 7.0-9.0, 20-30 degrees C, and with NaCl 3.0-5.0 %. The predominant menaquinone was MK-7 and the major cellular fatty acids were anteiso-C 15:0, iso-C 16: 0 and C 16:0. The polar lipids in the cell wall included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, three unidentified phospholipids and one unidentified lipid. The comparison of 16S rRNA gene sequences indicated that strain IB182496T was most closely related to `Paenibacillus sambharensis' SMB1 and Paenibacillus tarimensis SA-7-6T with similarities of 95.7 and 95.5 %, respectively. The whole-genome average nucleotide identity values between strain IB182496T and the two reference strains were 70.8 and 70.5%, and the digital DNA-DNA hybridization values were 18.7 and 18.0 %, respectively. Genomic analyses showed that strain IB182496T presented a genome of 6.22 Mbp with chromosomal G+C content of 60.3 %, and a total of 5261 genes were predicted. The combined phylogenetic relatedness, phenotypic and genotypic features supported the conclusion that strain IB182496T should be considered as representing a novel species of the genus Paenibacillus, for which we propose the name Paenibacillus sabuli sp. nov. with the type strain IB182496T (=MCCC 1K04627T=JCM 34216T).
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页数:7
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共 45 条
[21]   TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy [J].
Meier-Kolthoff, Jan P. ;
Goeker, Markus .
NATURE COMMUNICATIONS, 2019, 10 (1)
[22]   Genome sequence-based species delimitation with confidence intervals and improved distance functions [J].
Meier-Kolthoff, Jan P. ;
Auch, Alexander F. ;
Klenk, Hans-Peter ;
Goeker, Markus .
BMC BIOINFORMATICS, 2013, 14
[23]   AN INTEGRATED PROCEDURE FOR THE EXTRACTION OF BACTERIAL ISOPRENOID QUINONES AND POLAR LIPIDS [J].
MINNIKIN, DE ;
ODONNELL, AG ;
GOODFELLOW, M ;
ALDERSON, G ;
ATHALYE, M ;
SCHAAL, A ;
PARLETT, JH .
JOURNAL OF MICROBIOLOGICAL METHODS, 1984, 2 (05) :233-241
[24]   Pontibacter mangrovi sp. nov., isolated from mangrove sediment [J].
Mo, Kun-lian ;
Wang, Ling ;
Wu, Qing-juan ;
Ye, Lin ;
Liu, Xing-di ;
Hu, Yong-hua ;
Huang, Hui-qin .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (07) :4245-4249
[25]   Swarming motility, secretion of type 3 effectors and biofilm formation phenotypes exhibited within a large cohort of Pseudomonas aeruginosa clinical isolates [J].
Murray, Thomas S. ;
Ledizet, Michel ;
Kazmierczak, Barbara I. .
JOURNAL OF MEDICAL MICROBIOLOGY, 2010, 59 (05) :511-520
[26]   Paenibacillus piri sp. nov., isolated from urban soil [J].
Ngoc Hoang Trinh ;
Kim, Jaisoo .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (01) :656-661
[27]   Paenibacillus yunnanensis sp nov., isolated from Pu'er tea [J].
Niu, Lili ;
Tang, Tianyi ;
Ma, Zhongliang ;
Song, Lei ;
Zhang, Kegui ;
Chen, Yuanyuan ;
Hua, Ziyi ;
Hu, Xing ;
Zhao, Meng .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 :3806-3811
[28]  
Priest F.G., 2009, BERGEYS MANUAL SYSTE, P269
[29]   JS']JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison [J].
Richter, Michael ;
Rossello-Mora, Ramon ;
Gloeckner, Frank Oliver ;
Peplies, Joerg .
BIOINFORMATICS, 2016, 32 (06) :929-931
[30]   Shifting the genomic gold standard for the prokaryotic species definition [J].
Richter, Michael ;
Rossello-Mora, Ramon .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (45) :19126-19131