EnCurv: Simple Technique of Maintaining Global Membrane Curvature in Molecular Dynamics Simulations

被引:16
|
作者
Yesylevskyy, Semen [3 ,4 ]
Khandelia, Himanshu [1 ,2 ]
机构
[1] Univ Southern Denmark, Dept Phys Chem & Pharm, PHYLIFE Phys Life Sci, DK-5230 Odense M, Denmark
[2] MEMPHYS Ctr Biomembrane Phys, Odense, Denmark
[3] Natl Acad Sci Ukraine, Dept Phys Biol Syst, Inst Phys, UA-03028 Kiev, Ukraine
[4] Univ Bourgogne Franche Comte, Lab Chrono Environm, UMR CNRS 6249, F-25030 Besancon, France
基金
新加坡国家研究基金会;
关键词
D O I
10.1021/acs.jctc.0c00800
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The EnCurv method for maintaining membrane curvature in molecular dynamics simulations is introduced. The method allows maintaining any desired curvature in a sector of lipid membrane bent in a single plane without adding any unphysical interactions into the system and without restrictions on lateral and transversal lipid diffusion and distribution. The current implementation is limited to the membranes curved in a single plane but generalization to arbitrary curvature and membrane topology is possible. The method is simple, easy to implement, and scales linearly with the system size. EnCurv is agnostic to the force field, simulation parameters, and membrane composition. The proof of principle implementation (https://github.com/yesint/EnCurv) is compatible with the majority of modern simulation packages and shows consistent results on the model systems.
引用
收藏
页码:1181 / 1193
页数:13
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