The Growing Toolbox for Protein Synthesis Studies

被引:80
作者
Iwasaki, Shintaro [1 ]
Ingolia, Nicholas T. [2 ]
机构
[1] RIKEN, Wako, Saitama 3510198, Japan
[2] Univ Calif Berkeley, Dept Mol & Cell Biol, 229 Stanley Hall, Berkeley, CA 94720 USA
基金
日本学术振兴会; 美国国家卫生研究院;
关键词
RIBOSOME PROFILING REVEALS; MESSENGER-RNA TRANSLATION; EMBRYONIC STEM-CELLS; GENOME-WIDE ANALYSIS; IN-VIVO; MAMMALIAN-CELLS; NUCLEOTIDE RESOLUTION; GENE-EXPRESSION; QUALITY-CONTROL; LIVE CELLS;
D O I
10.1016/j.tibs.2017.05.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Protein synthesis stands at the last stage of the central dogma of molecular biology, providing a final regulatory layer for gene expression. Reacting to environmental cues and internal signals, the translation machinery can quickly tune the translatome from a pre-existing pool of RNAs, before the transcriptome changes. Although the translation reaction itself has been known since the 1950s, the quantitative or even qualitative measurement of its efficacy in cells has posed experimental and analytic hurdles. In this review, we outline the array of state-of-the-art methods that have emerged to tackle the hidden aspects of translational control.
引用
收藏
页码:612 / 624
页数:13
相关论文
共 93 条
  • [1] Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
    Arava, Y
    Wang, YL
    Storey, JD
    Liu, CL
    Brown, PO
    Herschlag, D
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (07) : 3889 - 3894
  • [2] Dynamics of ribosome scanning and recycling revealed by translation complex profiling
    Archer, Stuart K.
    Shirokikh, Nikolay E.
    Beilharz, Traude H.
    Preiss, Thomas
    [J]. NATURE, 2016, 535 (7613) : 570 - +
  • [3] Accounting for biases in riboprofiling data indicates a major role for proline in stalling translation
    Artieri, Carlo G.
    Fraser, Hunter B.
    [J]. GENOME RESEARCH, 2014, 24 (12) : 2011 - 2021
  • [4] Novel proteomic approach (PUNCH-P) reveals cell cycle-specific fluctuations in mRNA translation
    Aviner, Ranen
    Geiger, Tamar
    Elroy-Stein, Orna
    [J]. GENES & DEVELOPMENT, 2013, 27 (16) : 1834 - 1844
  • [5] Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes
    Becker, Annemarie H.
    Oh, Eugene
    Weissman, Jonathan S.
    Kramer, Guenter
    Bukau, Bernd
    [J]. NATURE PROTOCOLS, 2013, 8 (11) : 2212 - 2239
  • [6] Targeting the translation machinery in cancer
    Bhat, Mamatha
    Robichaud, Nathaniel
    Hulea, Laura
    Sonenberg, Nahum
    Pelletier, Jerry
    Topisirovic, Ivan
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2015, 14 (04) : 261 - 278
  • [7] Design of Photocaged Puromycin for Nascent Polypeptide Release and Spatiotemporal Monitoring of Translation
    Buhr, Florian
    Kohl-Landgraf, Joerg
    Dieck, Susanne Tom
    Hanus, Cyril
    Chatterjee, Deep
    Hegelein, Andreas
    Schuman, Erin M.
    Wachtveitl, Josef
    Schwalbe, Harald
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2015, 54 (12) : 3717 - 3721
  • [8] In the right place at the right time: visualizing and understanding mRNA localization
    Buxbaum, Adina R.
    Haimovich, Gal
    Singer, Robert H.
    [J]. NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2015, 16 (02) : 95 - 109
  • [9] Positively Charged Residues Are the Major Determinants of Ribosomal Velocity
    Charneski, Catherine A.
    Hurst, Laurence D.
    [J]. PLOS BIOLOGY, 2013, 11 (03):
  • [10] Cotranslational signal-independent SRP preloading during membrane targeting
    Chartron, Justin W.
    Hunt, Katherine C. L.
    Frydman, Judith
    [J]. NATURE, 2016, 536 (7615) : 224 - +