Characterizing Mobilized Virulence Factors and Multidrug Resistance Genes in Carbapenemase-Producing Klebsiella pneumoniae in a Sri Lankan Hospital

被引:17
作者
Zhu, Chendi [1 ]
Liyanapathirana, Veranja [2 ]
Li, Carmen [1 ]
Pinto, Vasanthi [3 ]
Hui, Mamie [1 ]
Lo, Norman [1 ]
Wong, Kam T. [1 ]
Dissanayake, Nilanthi [2 ]
Ip, Margaret [1 ]
机构
[1] Chinese Univ Hong Kong, Dept Microbiol, Shatin, Hong Kong, Peoples R China
[2] Univ Peradeniya, Dept Microbiol, Fac Med, Kandy, Sri Lanka
[3] Univ Peradeniya, Dept Anesthesiol & Crit Care, Fac Med, Kandy, Sri Lanka
来源
FRONTIERS IN MICROBIOLOGY | 2018年 / 9卷
关键词
OXA-181; quinolone; yersiniabactin; Klebsiella pneumoniae; Sri Lanka; OXA-181-PRODUCING ESCHERICHIA-COLI; SPECTRUM-BETA-LACTAMASE; OXA-48-LIKE CARBAPENEMASES; PUBLIC-HEALTH; ENTEROBACTERIACEAE; SEQUENCE; OXA-181; OMPK36; MECHANISMS; EMERGENCE;
D O I
10.3389/fmicb.2018.02044
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Limited data is available on the epidemiology and characteristics of carbapenem-resistant Enterobacteriaceae (CRE) and their associated plasmids or virulence determinants from Sri Lanka. Through whole genome sequencing of CREs from the intensive care units of a Sri Lankan teaching hospital, we identified a carbapenemase gene, bla(OXA-181) in 10 carbapenemase-producing Klebsiella pneumoniae isolates (two strains of ST437 and eight strains of ST147) from 379 respiratory specimens. bla(OXA-181) was carried in three variants of ColE-type plasmids. K. pneumoniae strains with ompK36 variants showed high minimum inhibitory concentrations to carbapenem. Furthermore, genes encoding for extended spectrum beta-lactamases (ESBL), plasmidmediated quinolone resistance (PMQR) determinants (qnr, aac(6')-Ib-cr, and oqxAB) were present in all 10 strains. Amino acid substitution in chromosomal quinolone resistance-determining regions (QRDRs) gyrA (Ser8311e) and parC (Ser8011e) were also observed. All strains had yersiniabactin genes on mobile element ICEkp. Strict infection control practices and judicious use of antibiotics are warranted to prevent further spread of multidrug-resistant K. pneumoniae.
引用
收藏
页数:7
相关论文
共 40 条
  • [1] Mechanism of Quinolone Action and Resistance
    Aldred, Katie J.
    Kerns, Robert J.
    Osheroff, Neil
    [J]. BIOCHEMISTRY, 2014, 53 (10) : 1565 - 1574
  • [2] BASIC LOCAL ALIGNMENT SEARCH TOOL
    ALTSCHUL, SF
    GISH, W
    MILLER, W
    MYERS, EW
    LIPMAN, DJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
  • [3] Andrews S., 2010, FASTQC QUALITY CONTR, DOI [10.1128/AAC.01497-10, DOI 10.1128/AAC.01497-10]
  • [4] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [5] In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
    Carattoli, Alessandra
    Zankari, Ea
    Garcia-Fernandez, Aurora
    Larsen, Mette Voldby
    Lund, Ole
    Villa, Laura
    Aarestrup, Frank Moller
    Hasman, Henrik
    [J]. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2014, 58 (07) : 3895 - 3903
  • [6] Early Dissemination of NDM-1-and OXA-181-Producing Enterobacteriaceae in Indian Hospitals: Report from the SENTRY Antimicrobial Surveillance Program, 2006-2007
    Castanheira, Mariana
    Deshpande, Lalitagauri M.
    Mathai, Dilip
    Bell, Jan M.
    Jones, Ronald N.
    Mendes, Rodrigo E.
    [J]. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2011, 55 (03) : 1274 - 1278
  • [7] Centers for Disease Control and Prevention, 2013, ANT RES THREATS US
  • [8] Clinical and Laboratory Standards Institute (CLSI), 2018, CLSI Standard M02, V13th ed.
  • [9] Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    Darling, ACE
    Mau, B
    Blattner, FR
    Perna, NT
    [J]. GENOME RESEARCH, 2004, 14 (07) : 1394 - 1403
  • [10] Risk factors for the acquisition of OXA-48-producing Enterobacteriaceae in a hospital outbreak setting: a matched case-control study
    Dautzenberg, M. J. D.
    Ossewaarde, J. M.
    de Greeff, S. C.
    Troelstra, A.
    Bonten, M. J. M.
    [J]. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2016, 71 (08) : 2273 - 2279