Immunology Driven by Large-Scale Single-Cell Sequencing

被引:50
|
作者
Gomes, Tomas [1 ]
Teichmann, Sarah A. [1 ,2 ,3 ]
Talavera-Lopez, Carlos [1 ,2 ]
机构
[1] Wellcome Sanger Inst, Wellcome Genome Campus, Hinxton, England
[2] EBI, EMBL, Wellcome Genome Campus, Hinxton, England
[3] Univ Cambridge, Dept Phys, Cavendish Lab, Theory Condensed Matter, Cambridge, England
基金
欧盟地平线“2020”;
关键词
REGULATORY NETWORK INFERENCE; RNA-SEQ; CHROMATIN ACCESSIBILITY; CLONALITY INFERENCE; EXPRESSION; RECONSTRUCTION; HETEROGENEITY; EPITOPE; LEVEL;
D O I
10.1016/j.it.2019.09.004
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The immune system encompasses a large degree of phenotypic diversity and plasticity in its cell types, and more is to be uncovered. We argue that large, multiomic datasets of single-cell resolution, in conjunction with improved computational methods, will be essential to resolving immune cell identity. Existing datasets, combined with 'big data' methodologies, can serve as platform to support future studies in immunology. Technical and analytical advances in multio-mies and spatial integration can provide a reference for gene regulation and cellular interaction! in spatially structured tissue contexts. We posit that these developments may allow guided functional studies of immune cell populations and lay the groundwork for informed cell engineering and precision medicine.
引用
收藏
页码:1011 / 1021
页数:11
相关论文
共 50 条
  • [21] Applications of single-cell and bulk RNA sequencing in onco-immunology
    Kuksin, Maria
    Morel, Daphne
    Aglave, Marine
    Danlos, Francois-Xavier
    Marabelle, Aurelien
    Zinovyev, Andrei
    Gautheret, Daniel
    Verlingue, Loic
    EUROPEAN JOURNAL OF CANCER, 2021, 149 : 193 - 210
  • [22] JOINT for large-scale single-cell RNA-sequencing analysis via soft-clustering and parallel computing
    Cui, Tao
    Wang, Tingting
    BMC GENOMICS, 2021, 22 (01)
  • [23] OPTIMIZING SINGLE-CELL RNA SEQUENCING FOR CF HUMAN IMMUNOLOGY STUDIES
    Rysavy, N.
    Poch, K.
    Caceres, S.
    Laborda, C.
    Leti, F.
    Walton, K.
    Hisert, K.
    Fingerlin, T.
    O'Connor, B.
    Anderson, K.
    Vestal, B.
    Reinhardt, R.
    Saavedra, M. T.
    PEDIATRIC PULMONOLOGY, 2020, 55 : S195 - S195
  • [24] Improving control in microbial cell factories: from single-cell to large-scale bioproduction
    Delvigne, Frank
    Zacchetti, Boris
    Fickers, Patrick
    Fifani, Barbara
    Roulling, Frederic
    Lefebvre, Coralie
    Neubauer, Peter
    Junne, Stefan
    FEMS MICROBIOLOGY LETTERS, 2018, 365 (22)
  • [25] Application of single-cell RNA sequencing methodologies in understanding haematopoiesis and immunology
    Ranzoni, Anna M.
    Strzelecka, Paulina M.
    Cvejic, Ana
    SINGLE CELL BIOLOGY, 2019, 63 (02): : 217 - 225
  • [26] Large-scale single-cell dissection of immune dysregulation in patients with monoclonal gammopathies
    Sklavenitis-Pistofidis, Romanos
    Wu, Ting
    Lightbody, Elizabeth
    Konishi, Yoshinobu
    Rahmat, Mahshid
    Timonian, Michael
    Tsuji, Junko
    Aranha, Michelle
    Firer, Danielle
    Haradhvala, Nicholas
    Heilpern-Mallory, Daniel
    Getz, Gad
    Ghobrial, Irene
    CLINICAL LYMPHOMA MYELOMA & LEUKEMIA, 2023, 23 : S267 - S268
  • [27] A large-scale benchmark for network inference from single-cell perturbation data
    Chevalley, Mathieu
    Roohani, Yusuf H.
    Mehrjou, Arash
    Leskovec, Jure
    Schwab, Patrick
    COMMUNICATIONS BIOLOGY, 2025, 8 (01)
  • [28] Deep-learning methods for unveiling large-scale single-cell transcriptomes
    Shen, Xilin
    Li, Xiangchun
    CANCER BIOLOGY & MEDICINE, 2023, 20 (12) : 972 - 980
  • [29] Deep-learning methods for unveiling large-scale single-cell transcriptomes
    Xilin Shen
    Xiangchun Li
    Cancer Biology & Medicine, 2023, 20 (12) : 972 - 980
  • [30] Single-cell gene regulation network inference by large-scale data integration
    Dong, Xin
    Tang, Ke
    Xu, Yunfan
    Wei, Hailin
    Han, Tong
    Wang, Chenfei
    NUCLEIC ACIDS RESEARCH, 2022, 50 (21) : E126