Predicting data quality in biological X-ray solution scattering

被引:1
|
作者
Wang, Chenzheng [1 ]
Lin, Yuexia [2 ]
Bougie, Devin [3 ]
Gillilan, Richard E. [4 ]
机构
[1] DellEMC Shanghai COE, Shanghai 200433, Peoples R China
[2] Harvard Univ, Paulson Sch Engn & Appl Sci, Cambridge, MA 02138 USA
[3] Cornell Univ, CCLASSE Cornell Lab Accelerator Based Sci & Educ, Ithaca, NY 14853 USA
[4] Cornell Univ, MacCHESS Macromol Diffract Facil CHESS, Ithaca, NY 14853 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2018年 / 74卷
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
BioSAXS; time-resolved; microfluidics; noise; X-ray damage; CHESS-U; SMALL-ANGLE SCATTERING; RADIATION-DAMAGE; PROTEIN SOLUTION; SAXS; MACROMOLECULES; STANDARD; WINDOWS;
D O I
10.1107/S2059798318005004
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Biological small-angle X-ray solution scattering (BioSAXS) is now widely used to gain information on biomolecules in the solution state. Often, however, it is not obvious in advance whether a particular sample will scatter strongly enough to give useful data to draw conclusions under practically achievable solution conditions. Conformational changes that appear to be large may not always produce scattering curves that are distinguishable from each other at realistic concentrations and exposure times. Emerging technologies such as time-resolved SAXS (TR-SAXS) pose additional challenges owing to small beams and short sample path lengths. Beamline optics vary in brilliance and degree of background scatter, and major upgrades and improvements to sources promise to expand the reach of these methods. Computations are developed to estimate BioSAXS sample intensity at a more detailed level than previous approaches, taking into account flux, energy, sample thickness, window material, instrumental background, detector efficiency, solution conditions and other parameters. The results are validated with calibrated experiments using standard proteins on four different beamlines with various fluxes, energies and configurations. The ability of BioSAXS to statistically distinguish a variety of conformational movements under continuous-flow time-resolved conditions is then computed on a set of matched structure pairs drawn from the Database of Macromolecular Motions (http://molmovdb.org). The feasibility of experiments is ranked according to sample consumption, a quantity that varies by over two orders of magnitude for the set of structures. In addition to photon flux, the calculations suggest that window scattering and choice of wavelength are also important factors given the short sample path lengths common in such setups.
引用
收藏
页码:727 / 738
页数:12
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