Non-covalent interactions in blue copper protein probed by Met16 mutation and electronic and resonance Raman spectroscopy of Achromobacter cycloclastes pseudoazurin

被引:19
作者
Fitzpatrick, Marzena B. [1 ]
Obara, Yuji [2 ]
Fujita, Koyu [3 ]
Brown, Doreen E. [3 ]
Dooley, David M. [3 ]
Kohzuma, Takamitsu [1 ,2 ,4 ]
Czernuszewicz, Roman S. [1 ]
机构
[1] Univ Houston, Dept Chem, Houston, TX 77204 USA
[2] Ibaraki Univ, Inst Appl Beam Sci, Mito, Ibaraki 3108512, Japan
[3] Montana State Univ, Dept Chem & Biochem, Bozeman, MT 59717 USA
[4] Frontier Res Ctr Appl Atom Sci, Toukai, Ibaraki 3191106, Japan
关键词
Blue copper; Type; 1; Cu; Pseudoazurin; Cupredoxin; Resonance Raman; Non-covalent interaction; CRYSTAL-STRUCTURE DETERMINATIONS; ACTIVE-SITE; ALCALIGENES-XYLOSOXIDANS; NITRITE REDUCTASE; PI-INTERACTION; AXIAL-LIGAND; PLASTOCYANIN; SPECTRA; TYPE-1; AZURIN;
D O I
10.1016/j.jinorgbio.2009.11.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have used low-temperature (77 K) resonance Raman (RR) spectroscopy as a probe of the electronic and molecular structure to investigate weak pi-pi interactions between the metal ion-coordinated His imidazoles and aromatic side chains in the second coordination sphere of blue copper proteins. For this purpose, the RR spectra of Met16 mutants of Achromobacter cycloclastes pseudoazurin (AcPAz) with aromatic (Met16Tyr, Met16Trp, and Met16Phe) and aliphatic (Met16Ala, Met16Val, Met16Leu, and Metl6Ile) amino acid side chains have been obtained and analyzed over the 100-500 cm(-1) spectral region. Subtle strengthening of the Cu(II)-S(Cys) interaction on replacing Met16 with Tyr, Trp, and Phe is indicated by the upshifted (0.3-0.8 cm(-1)) RR bands involving nu(Cu-S)(Cys) stretching modes. In contrast, the RR spectra of Met16 mutants with aliphatic amino acids revealed larger (0.2-1.8 cm(-1)) shifts of the nu(Cu-S)(Cys), stretching modes to a lower frequency region, which indicate a weakening of the Cu(II)-S(Cys) bond. Comparisons of the predominantly v(Cu-S)(Cys) stretching RR peaks of the Met16X = Tyr, Trp, and Phe variants, with the molar absorptivity ratio epsilon(1)/epsilon(2) of sigma(similar to 455 nm)/pi(similar to 595 nm) (Cys)S -> Cu(II) charge-transfer bands in the optical spectrum and the axial/rhombic EPR signals, revealed a slightly more trigonal disposition of ligands about the copper(II) ion. In contrast, the RR spectra of Met16Z = Ala, Val, Leu, and Ile variants with aliphatic amino acid side chains show a more tetrahedral perturbation of the copper active site, as judged by the lower frequencies of the nu(Cu-S)(Cys) stretching modes, much larger values of the epsilon(1)/epsilon(2) ratio, and the increased rhombicity of the EPR spectra. (C) 2009 Elsevier Inc. All rights reserved.
引用
收藏
页码:250 / 260
页数:11
相关论文
共 68 条
[1]   Alkaline transition of pseudoazurin Met16X mutant proteins:: Protein stability influenced by the substitution of Met16 in the second sphere coordination [J].
Abdelhamid, Rehab F. ;
Obara, Yuji ;
Kohzuma, Takamitsu .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2008, 102 (5-6) :1373-1379
[2]   π-π interaction between aromatic ring and copper-coordinated His81 imidazole regulates the blue copper active-site structure [J].
Abdelhamid, Rehab F. ;
Obara, Yuji ;
Uchida, Yoshiko ;
Kohzuma, Takamitsu ;
Dooley, David M. ;
Brown, Doreen E. ;
Hori, Hiroshi .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2007, 12 (02) :165-173
[3]  
ADMAN ET, 1991, ADV PROTEIN CHEM, V42, P145
[4]   SPECTROCHEMICAL STUDIES ON THE BLUE COPPER PROTEIN AZURIN FROM ALCALIGENES-DENITRIFICANS [J].
AINSCOUGH, EW ;
BINGHAM, AG ;
BRODIE, AM ;
ELLIS, WR ;
GRAY, HB ;
LOEHR, TM ;
PLOWMAN, JE ;
NORRIS, GE ;
BAKER, EN .
BIOCHEMISTRY, 1987, 26 (01) :71-82
[5]   Occurrence of copper proteins through the three domains of life: A bioinformatic approach [J].
Andreini, Claudia ;
Banci, Lucia ;
Bertini, Ivano ;
Rosato, Antonio .
JOURNAL OF PROTEOME RESEARCH, 2008, 7 (01) :209-216
[6]   Copper-sulfur proteins: Using Raman spectroscopy to predict coordination geometry [J].
Andrew, CR ;
SandersLoehr, J .
ACCOUNTS OF CHEMICAL RESEARCH, 1996, 29 (08) :365-372
[7]   Cysteine ligand vibrations are responsible for the complex resonance Raman spectrum of azurin [J].
Andrew, CR ;
Han, J ;
denBlaauwen, T ;
vanPouderoyen, G ;
Vijgenboom, E ;
Canters, GW ;
Loehr, TM ;
SandersLoehr, J .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 1997, 2 (01) :98-107
[8]   RAMAN-SPECTROSCOPY AS AN INDICATOR OF CU-S BOND-LENGTH IN TYPE-1 AND TYPE-2 COPPER CYSTEINATE PROTEINS [J].
ANDREW, CR ;
YEOM, H ;
VALENTINE, JS ;
KARLSSON, BG ;
BONANDER, N ;
VANPOUDEROYEN, G ;
CANTERS, GW ;
LOEHR, TM ;
SANDERSLOEHR, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (25) :11489-11498
[9]   Dissimilatory nitrite and nitric oxide reductases [J].
Averill, BA .
CHEMICAL REVIEWS, 1996, 96 (07) :2951-2964
[10]   Spectroscopic studies of the Met182Thr mutant of nitrite reductase: Role of the axial ligand in the geometric and electronic structure of blue and green copper sites [J].
Basumallick, L ;
Szilagyi, RK ;
Zhao, YW ;
Shapleigh, JP ;
Scholes, CP ;
Solomon, EI .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (48) :14784-14792