Iron metabolism gene expression and prognostic features of hepatocellular carcinoma

被引:57
作者
Shen, Ying [1 ,2 ]
Li, Xin [1 ,2 ]
Zhao, Bin [1 ,2 ]
Xue, Yanru [1 ,2 ]
Wang, Shenghang [1 ,2 ]
Chen, Xin [1 ,2 ]
Yang, Jiancheng [1 ,2 ]
Lv, Huanhuan [1 ,2 ]
Shang, Peng [2 ,3 ]
机构
[1] Northwestern Polytech Univ, Sch Life Sci, Xian, Shaanxi, Peoples R China
[2] Northwestern Polytech Univ, Res & Dev Inst Shenzhen, Shenzhen 518057, Peoples R China
[3] Northwestern Polytech Univ, Sch Life Sci, Inst Special Environm Biophys, Key Lab Space Biosci & Biotechnol, Xian, Shaanxi, Peoples R China
基金
中国国家自然科学基金;
关键词
bioinformatics; hepatocellular carcinoma (HCC); iron metabolism; prognosis; TCGA; CELL-DEATH; CANCER; CARCINOGENESIS; FERROPTOSIS; PROTEIN; LIVER; INFLAMMATION; FERROPORTIN; BIOMARKERS; DISCOVERY;
D O I
10.1002/jcb.27184
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Iron metabolism is crucial to hepatocellular carcinoma progression and is a key determinant of prognosis. Protein-protein interactions within the iron metabolism gene network were analyzed using the European Molecular Biology Laboratory's Search Tool for Recurring Instances of Neighbouring Genes/Proteins database. We obtained 423 liver hepatocellular carcinoma gene expression profiles from the Cancer Genome Atlas database. The expression and pathway enrichment of representative iron intake genes (TFRC and DMT1), utilization genes (FTH1, FTL, HIF1A, HMOX1, SLC25A37, and SLC25A38), and efflux genes (FLVCR1 and SLC40A1) was investigated in tumor and adjacent tissues. We determined the relationship between iron metabolism and the prognostic features of liver hepatocellular carcinoma. The liver metabolism genes TFRC and FLVCR1 were related to survival, disease status, and prognosis in patients with hepatocellular carcinoma. Our results provide novel insight into liver cancer therapy.
引用
收藏
页码:9178 / 9204
页数:27
相关论文
共 51 条
[1]   The association of coffee intake with liver cancer risk is mediated by biomarkers of inflammation and hepatocellular injury: data from the European Prospective Investigation into Cancer and Nutrition [J].
Aleksandrova, Krasimira ;
Bamia, Christina ;
Drogan, Dagmar ;
Lagiou, Pagona ;
Trichopoulou, Antonia ;
Jenab, Mazda ;
Fedirko, Veronika ;
Romieu, Isabelle ;
Bueno-de-Mesquita, H. Bas ;
Pischon, Tobias ;
Tsilidis, Kostas ;
Overvad, Kim ;
Tjonneland, Anne ;
Bouton-Ruault, Marie-Christine ;
Dossus, Laure ;
Racine, Antoine ;
Kaaks, Rudolf ;
Kuehn, Tilman ;
Tsironis, Christos ;
Papatesta, Eleni-Maria ;
Saitakis, George ;
Palli, Domenico ;
Panico, Salvatore ;
Grioni, Sara ;
Tumino, Rosario ;
Vineis, Paolo ;
Peeters, Petra H. ;
Weiderpass, Elisabete ;
Lukic, Marko ;
Braaten, Tonje ;
Ramon Quiros, J. ;
Lujan-Barroso, Leila ;
Sanchez, Mara-Jose ;
Chilarque, Maria-Dolores ;
Ardanas, Eva ;
Dorronsoro, Miren ;
Nilsson, Lena Maria ;
Sund, Malin ;
Wallstrom, Peter ;
Ohlsson, Bodil ;
Bradbury, Kathryn E. ;
Khaw, Kay-Tee ;
Wareham, Nick ;
Stepien, Magdalena ;
Duarte-Salles, Talita ;
Assi, Nada ;
Murphy, Neil ;
Gunter, Marc J. ;
Riboli, Elio ;
Boeing, Heiner .
AMERICAN JOURNAL OF CLINICAL NUTRITION, 2015, 102 (06) :1498-1508
[2]   The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data [J].
Cerami, Ethan ;
Gao, Jianjiong ;
Dogrusoz, Ugur ;
Gross, Benjamin E. ;
Sumer, Selcuk Onur ;
Aksoy, Buelent Arman ;
Jacobsen, Anders ;
Byrne, Caitlin J. ;
Heuer, Michael L. ;
Larsson, Erik ;
Antipin, Yevgeniy ;
Reva, Boris ;
Goldberg, Arthur P. ;
Sander, Chris ;
Schultz, Nikolaus .
CANCER DISCOVERY, 2012, 2 (05) :401-404
[3]   Overexpression of transferrin receptor CD71 and its tumorigenic properties in esophageal squamous cell carcinoma [J].
Chan, Kin Tak ;
Choi, Mei Yuk ;
Lai, Kenneth K. Y. ;
Tan, Winnie ;
Tung, Lai Nar ;
Lam, Ho Yu ;
Tong, Daniel K. H. ;
Lee, Nikki P. ;
Law, Simon .
ONCOLOGY REPORTS, 2014, 31 (03) :1296-1304
[4]   Mutations in the Heme Exporter FLVCR1 Cause Sensory Neurodegeneration with Loss of Pain Perception [J].
Chiabrando, Deborah ;
Castori, Marco ;
di Rocco, Maja ;
Ungelenk, Martin ;
Giesselmann, Sebastian ;
Di Capua, Matteo ;
Madeo, Annalisa ;
Grammatico, Paola ;
Bartsch, Sophie ;
Huebner, Christian A. ;
Altruda, Fiorella ;
Silengo, Lorenzo ;
Tolosano, Emanuela ;
Kurth, Ingo .
PLOS GENETICS, 2016, 12 (12)
[5]   Targeting iron metabolism in drug discovery and delivery [J].
Crielaard, Bart J. ;
Lammers, Twan ;
Rivella, Stefano .
NATURE REVIEWS DRUG DISCOVERY, 2017, 16 (06) :400-423
[6]   DAVID: Database for annotation, visualization, and integrated discovery [J].
Dennis, G ;
Sherman, BT ;
Hosack, DA ;
Yang, J ;
Gao, W ;
Lane, HC ;
Lempicki, RA .
GENOME BIOLOGY, 2003, 4 (09)
[7]   Ferroptosis: An Iron-Dependent Form of Nonapoptotic Cell Death [J].
Dixon, Scott J. ;
Lemberg, Kathryn M. ;
Lamprecht, Michael R. ;
Skouta, Rachid ;
Zaitsev, Eleina M. ;
Gleason, Caroline E. ;
Patel, Darpan N. ;
Bauer, Andras J. ;
Cantley, Alexandra M. ;
Yang, Wan Seok ;
Morrison, Barclay, III ;
Stockwell, Brent R. .
CELL, 2012, 149 (05) :1060-1072
[8]   Ironing out Ferroportin [J].
Drakesmith, Hal ;
Nemeth, Elizabeta ;
Ganz, Tomas .
CELL METABOLISM, 2015, 22 (05) :777-787
[9]  
Ehsani Ardakani Mohammad Javad, 2016, Gastroenterol Hepatol Bed Bench, V9, pS14
[10]   The effect of HMGB1 on the clinicopathological and prognostic features of non-small cell lung cancer [J].
Feng, Anlin ;
Tu, Zhenbo ;
Yin, Bingjiao .
ONCOTARGET, 2016, 7 (15) :20507-20519