Molecular Subtyping Based on Cuproptosis-Related Genes and Characterization of Tumor Microenvironment Infiltration in Kidney Renal Clear Cell Carcinoma

被引:34
作者
Ji, Zhong-Hao [1 ,2 ]
Ren, Wen-Zhi [1 ]
Wang, Hao-Qi [1 ]
Gao, Wei [1 ]
Yuan, Bao [1 ]
机构
[1] Jilin Univ, Coll Anim Sci, Dept Lab Anim, Changchun, Peoples R China
[2] Changzhi Med Coll, Dept Basic Med, Changzhi, Peoples R China
基金
中国国家自然科学基金;
关键词
kidney renal clear cell carcinoma (KIRC); cuproptosis; gene signature; overall survival; immune status; FDX1; IDENTIFICATION; POLYMORPHISMS; MECHANISMS; TNFSF13;
D O I
10.3389/fonc.2022.919083
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
The incidence of kidney renal clear cell carcinoma (KIRC) is rising worldwide, and the prognosis is poor. Cuproptosis is a new form of cell death that is dependent on and regulated by copper ions. The relationship between cuproptosis and KIRC remains unclear. In the current study, changes in cuproptosis-related genes (CRGs) in TCGA-KIRC transcriptional datasets were characterized, and the expression patterns of these genes were analyzed. We identified three main molecular subtypes and discovered that multilayer CRG changes were associated with patient clinicopathological traits, prognosis, elesclomol sensitivity, and tumor microenvironment (TME) cell infiltration characteristics. Then, a CRG score was created to predict overall survival (OS). The CRG score was found to be strongly linked to the TME. These findings may help elucidate the roles of CRGs in KIRC, potentially enhancing understanding of cuproptosis and supporting the development of more effective immunotherapy strategies.
引用
收藏
页数:13
相关论文
共 49 条
[1]   CYFIP family proteins between autism and intellectual disability: links with Fragile X syndrome [J].
Abekhoukh, Sabiha ;
Bardoni, Barbara .
FRONTIERS IN CELLULAR NEUROSCIENCE, 2014, 8
[2]   Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression [J].
Becht, Etienne ;
Giraldo, Nicolas A. ;
Lacroix, Laetitia ;
Buttard, Benedicte ;
Elarouci, Nabila ;
Petitprez, Florent ;
Selves, Janick ;
Laurent-Puig, Pierre ;
Sautes-Fridman, Catherine ;
Fridman, Wolf H. ;
de Reynies, Aurelien .
GENOME BIOLOGY, 2016, 17
[3]   Elesclomol-induced increase of mitochondrial reactive oxygen species impairs glioblastoma stem-like cell survival and tumor growth [J].
Buccarelli, Mariachiara ;
D'Alessandris, Quintino Giorgio ;
Matarrese, Paola ;
Mollinari, Cristiana ;
Signore, Michele ;
Cappannini, Andrea ;
Martini, Maurizio ;
D'Aliberti, Pierluigi ;
De Luca, Gabriele ;
Pedini, Francesca ;
Boe, Alessandra ;
Biffoni, Mauro ;
Pallini, Roberto ;
Ricci-Vitiani, Lucia .
JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH, 2021, 40 (01)
[4]   Hepatocyte Nuclear Factor-1β Controls Mitochondrial Respiration in Renal Tubular Cells [J].
Casemayou, Audrey ;
Fournel, Audren ;
Bagattin, Alessia ;
Schanstra, Joost ;
Belliere, Julie ;
Decramer, Stephane ;
Marsal, Dimitri ;
Gillet, Marion ;
Chassaing, Nicolas ;
Huart, Antoine ;
Pontoglio, Marco ;
Knauf, Claude ;
Bascands, Jean-Loup ;
Chauveau, Dominique ;
Faguer, Stanislas .
JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 2017, 28 (11) :3204-3216
[5]   Identification of novel mutations in endometrial cancer patients by whole-exome sequencing [J].
Chang, Ya-Sian ;
Huang, Hsien-Da ;
Yeh, Kun-Tu ;
Chang, Jan-Gowth .
INTERNATIONAL JOURNAL OF ONCOLOGY, 2017, 50 (05) :1778-1784
[6]  
Clough E, 2016, METHODS MOL BIOL, V1418, P93, DOI 10.1007/978-1-4939-3578-9_5
[7]   Human enamel thickness and ENAM polymorphism [J].
Daubert, Diane M. ;
Kelley, Joanna L. ;
Udod, Yuriy G. ;
Habor, Carolina ;
Kleist, Chris G. ;
Furman, Ilona K. ;
Tikonov, Igor N. ;
Swanson, Willie J. ;
Roberts, Frank A. .
INTERNATIONAL JOURNAL OF ORAL SCIENCE, 2016, 8 (02) :93-97
[8]   CYFIP1 is directly controlled by NOTCH1 and down-regulated in cutaneous squamous cell carcinoma [J].
Dziunyczn, Piotr J. ;
Neu, Johannes ;
Lefort, Karine ;
Djerbi, Nadia ;
Freiberger, Sandra N. ;
Iotzova-Weiss, Guergana ;
French, Lars E. ;
Dotto, Gian-Paolo ;
Hofbauer, Gunther F. .
PLOS ONE, 2017, 12 (04)
[9]   Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data [J].
Finotello, Francesca ;
Mayer, Clemens ;
Plattner, Christina ;
Laschober, Gerhard ;
Rieder, Dietmar ;
Hackl, Hubert ;
Krogsdam, Anne ;
Loncova, Zuzana ;
Posch, Wilfried ;
Wilflingseder, Doris ;
Sopper, Sieghart ;
Ijsselsteijn, Marieke ;
Brouwer, Thomas P. ;
Johnson, Douglas ;
Xu, Yaomin ;
Wang, Yu ;
Sanders, Melinda E. ;
Estrada, Monica V. ;
Ericsson-Gonzalez, Paula ;
Charoentong, Pornpimol ;
Balko, Justin ;
de Miranda, Noel Filipe da Cunha Carvahlo ;
Trajanoski, Zlatko .
GENOME MEDICINE, 2019, 11 (1)
[10]   Elesclomol induces copper-dependent ferroptosis in colorectal cancer cells via degradation of ATP7A [J].
Gao, Wei ;
Huang, Zhao ;
Duan, Jiufei ;
Nice, Edouard C. ;
Lin, Jie ;
Huang, Canhua .
MOLECULAR ONCOLOGY, 2021, 15 (12) :3527-3544