Common and well-documented HLA alleles -: Report of the ad-hoc committee of the American Society for Histocompatiblity and Immunogenetics

被引:169
作者
Cano, Pedro
Klitz, William
Mack, Steven J.
Maiers, Martin
Marsh, Steven G. E.
Noreen, Harriet
Reed, Elaine F.
Senitzer, David
Setterholm, Michelle
Smith, Anajane
Fernandez-Vina, Marcelo
机构
[1] Univ Texas, MD Anderson Canc Ctr, HLA Typing Lab, Houston, TX 77054 USA
[2] Univ Calif Berkeley, Berkeley, CA 94720 USA
[3] Inst Publ Hlth, Oakland, CA USA
[4] Childrens Hosp, Oakland Res Inst, Oakland, CA 94609 USA
[5] Roche Mol Syst, Dept Human Genet, Alameda, CA USA
[6] Natl Marrow Donor Program, Minneapolis, MN USA
[7] Royal Free Hosp, Anthony Nolan Res Inst, London NW3 2QG, England
[8] Univ Calif Los Angeles, David Geffen Sch Med, Immunogenet Ctr, Dept Pathol, Minneapolis, MN USA
[9] City Hope Natl Med Ctr, Duarte, CA 91010 USA
[10] Seattle Canc Care Alliance, Clin Immunogenet Lab, Seattle, WA USA
关键词
HLA; common allele; null allele; well-documented allele; proficiency testing; antigen recognition site; clinical histocompatibility; genotype ambiguity;
D O I
10.1016/j.humimm.2007.01.014
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
In histocompatibility testing some genotype ambiguities are almost always resolved into the genotype with the most common alleles. To achieve unambiguous assignments additional unwieldy tests are performed. The American Society for Histocompatibility and Immunogenetics formed a committee to define what human leukocyte antigen (HLA) genotypes do not need to be resolved in external proficiency testing. The tasks included detailed analysis of large datasets of high-resolution typing and thorough review of the pertinent scientific literature. Strict criteria were used to create a catalogue of common and well-documented (CWD) alleles. In total, 130, 245, 81, and 143 of the highly polymorphic HLA-A, -B, -C, and DRB1 loci fell into the CWD category; these represent 27%-30% of all alleles recognized. For the loci DRB3/4/5, DQA1, DQB1, and DPB1, a total of 29, 16, 26, and 52 CWD alleles were identified. A recommendation indicated that an acceptable report should only include one possible genotype; multiple genotypes can only be reported if only one of these includes two alleles of the CWD group. Exceptions in which resolution is not necessary are ambiguities involving functional alleles with identical sequences in the antigen recognition site. The criteria were established for proficiency testing, which could be a valuable tool when making clinical histocompatibility decisions.
引用
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页码:392 / 417
页数:26
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