CircRNA-derived pseudogenes

被引:98
作者
Dong, Rui [1 ]
Zhang, Xiao-Ou [1 ]
Zhang, Yang [2 ]
Ma, Xu-Kai [1 ]
Chen, Ling-Ling [2 ,3 ]
Yang, Li [1 ,3 ]
机构
[1] Chinese Acad Sci, Shanghai Inst Biol Sci, CAS Ctr Excellence Brain Sci & Intelligence Techn, Key Lab Computat Biol,CAS MPG Partner Inst Comput, Shanghai 200031, Peoples R China
[2] Chinese Acad Sci, Shanghai Inst Biol Sci, CAS Ctr Excellence Mol Cell Sci, State Key Lab Mol Biol,Inst Biochem & Cell Biol, Shanghai 200031, Peoples R China
[3] ShanghaiTech Univ, Sch Life Sci, Shanghai 200031, Peoples R China
关键词
CIRCULAR RNAS; REVEALS; BIOGENESIS;
D O I
10.1038/cr.2016.42
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
引用
收藏
页码:747 / 750
页数:4
相关论文
共 14 条
[1]   Expression of Linear and Novel Circular Forms of an INK4/ARF-Associated Non-Coding RNA Correlates with Atherosclerosis Risk [J].
Burd, Christin E. ;
Jeck, William R. ;
Liu, Yan ;
Sanoff, Hanna K. ;
Wang, Zefeng ;
Sharpless, Norman E. .
PLOS GENETICS, 2010, 6 (12) :1-15
[2]   The biogenesis and emerging roles of circular RNAs [J].
Chen, Ling-Ling .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2016, 17 (04) :205-211
[3]   A 3′ Poly(A) Tract Is Required for LINE-1 Retrotransposition [J].
Doucet, Aurelien J. ;
Wilusz, Jeremy E. ;
Miyoshi, Tomoichiro ;
Liu, Ying ;
Moran, John V. .
MOLECULAR CELL, 2015, 60 (05) :728-741
[4]   Expanded identification and characterization of mammalian circular RNAs [J].
Guo, Junjie U. ;
Agarwal, Vikram ;
Guo, Huili ;
Bartel, David P. .
GENOME BIOLOGY, 2014, 15 (07)
[5]   Analysis of Intron Sequences Reveals Hallmarks of Circular RNA Biogenesis in Animals [J].
Ivanov, Andranik ;
Memczak, Sebastian ;
Wyler, Emanuel ;
Torti, Francesca ;
Porath, Hagit T. ;
Orejuela, Marta R. ;
Piechotta, Michael ;
Levanon, Erez Y. ;
Landthaler, Markus ;
Dieterich, Christoph ;
Rajewsky, Nikolaus .
CELL REPORTS, 2015, 10 (02) :170-177
[6]   Circular RNAs are abundant, conserved, and associated with ALU repeats [J].
Jeck, William R. ;
Sorrentino, Jessica A. ;
Wang, Kai ;
Slevin, Michael K. ;
Burd, Christin E. ;
Liu, Jinze ;
Marzluff, William F. ;
Sharpless, Norman E. .
RNA, 2013, 19 (02) :141-157
[7]   Expressed Pseudogenes in the Transcriptional Landscape of Human Cancers [J].
Kalyana-Sundaram, Shanker ;
Kumar-Sinha, Chandan ;
Shankar, Sunita ;
Robinson, Dan R. ;
Wu, Yi-Mi ;
Cao, Xuhong ;
Asangani, Irfan A. ;
Kothari, Vishal ;
Prensner, John R. ;
Lonigro, Robert J. ;
Iyer, Matthew K. ;
Barrette, Terrence ;
Shanmugam, Achiraman ;
Dhanasekaran, Saravana M. ;
Palanisamy, Nallasivam ;
Chinnaiyan, Arul M. .
CELL, 2012, 149 (07) :1622-1634
[8]   Cell-Type Specific Features of Circular RNA Expression [J].
Salzman, Julia ;
Chen, Raymond E. ;
Olsen, Mari N. ;
Wang, Peter L. ;
Brown, Patrick O. .
PLOS GENETICS, 2013, 9 (09)
[9]   Exon Circularization Requires Canonical Splice Signals [J].
Starke, Stefan ;
Jost, Isabelle ;
Rossbach, Oliver ;
Schneider, Tim ;
Schreiner, Silke ;
Hung, Lee-Hsueh ;
Bindereif, Albrecht .
CELL REPORTS, 2015, 10 (01) :103-111
[10]   CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription [J].
Tang, Zhonghui ;
Luo, Oscar Junhong ;
Li, Xingwang ;
Zheng, Meizhen ;
Zhu, Jacqueline Jufen ;
Szalaj, Przemyslaw ;
Trzaskoma, Pawel ;
Magalska, Adriana ;
Wlodarczyk, Jakub ;
Ruszczycki, Blazej ;
Michalski, Paul ;
Piecuch, Emaly ;
Wang, Ping ;
Wang, Danjuan ;
Tian, Simon Zhongyuan ;
Penrad-Mobayed, May ;
Sachs, Laurent M. ;
Ruan, Xiaoan ;
Wei, Chia-Lin ;
Liu, Edison T. ;
Wilczynski, Grzegorz M. ;
Plewczynski, Dariusz ;
Li, Guoliang ;
Ruan, Yijun .
CELL, 2015, 163 (07) :1611-1627