Inherited determinants of early recurrent somatic mutations in prostate cancer

被引:24
作者
Romanel, Alessandro [1 ]
Garritano, Sonia [1 ]
Stringa, Blerta [1 ]
Blattner, Mirjam [1 ]
Dalfovo, Davide [1 ]
Chakravarty, Dimple [2 ]
Soong, David [3 ]
Cotter, Kellie A. [2 ]
Petris, Gianluca [1 ]
Dhingra, Priyanka [3 ]
Gasperini, Paola [1 ]
Cereseto, Anna [1 ]
Elemento, Olivier [2 ,3 ]
Sboner, Andrea [2 ]
Khurana, Ekta [2 ]
Inga, Alberto [1 ]
Rubin, Mark A. [2 ,4 ,5 ]
Demichelis, Francesca [1 ,2 ]
机构
[1] Univ Trento, Ctr Integrat Biol, Via Sommarive 9, I-38123 Trento, Italy
[2] Weill Cornell Med, Caryl & Israel Englander Inst Precis Med, New York Presbyterian Hosp, 413 East 69th St, New York, NY 10021 USA
[3] Weill Cornell Med, Dept Physiol & Biophys, 1300 York Ave, New York, NY 10065 USA
[4] Weill Cornell Med, Dept Pathol & Lab Med, 1300 York Ave, New York, NY 10065 USA
[5] Weill Cornell Med, Sandra & Edward Meyer Canc Ctr, 1300 York Ave, New York, NY 10065 USA
关键词
BINDING; GENE; RISK; SPOP; IDENTIFICATION; ASSOCIATION; FREQUENCY; VARIANTS; TMPRSS2; FUSION;
D O I
10.1038/s41467-017-00046-0
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Prostate cancer is a highly heritable molecularly and clinically heterogeneous disease. To discover germline events involved in prostate cancer predisposition, we develop a computational approach to nominate heritable facilitators of somatic genomic events in the context of the androgen receptor signaling. Here, we use a ranking score and benign prostate transcriptomes to identify a non-coding polymorphic regulatory element at 7p14.3 that associates with DNA repair and hormone-regulated transcript levels and with an early recurrent prostate cancer-specific somatic mutation in the Speckle-Type POZ protein (SPOP) gene. The locus shows allele-specific activity that is concomitantly modulated by androgen receptor and by CCAAT/enhancer-binding protein (C/EBP) beta (CEBPB). Deletion of this locus via CRISPR-Cas9 leads to deregulation of the genes predicted to interact with the 7p14.3 locus by Hi-C chromosome conformation capture data. This study suggests that a polymorphism at 7p14.3 may predispose to SPOP mutant prostate cancer subclass through a hormone-dependent DNA damage response.
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页数:10
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