A Novel Group of Rhizobium tumorigenes-Like Agrobacteria Associated with Crown Gall Disease of Rhododendron and Blueberry

被引:12
作者
Kuzmanovic, Nemanja [1 ]
Behrens, Patric [1 ]
Idczak, Elke [2 ]
Wagner, Stefan [2 ]
Goetz, Monika [2 ]
Sproeer, Cathrin [3 ]
Bunk, Boyke [3 ]
Overmann, Joerg [3 ,4 ]
Smalla, Kornelia [1 ]
机构
[1] Julius Kuhn Inst, Inst Epidemiol & Pathogen Diagnost, Fed Res Ctr Cultivated Plants, D-38104 Braunschweig, Germany
[2] Julius Kuhn Inst, Inst Plant Protect Hort & Forests, Fed Res Ctr Cultivated Plants, D-38104 Braunschweig, Germany
[3] Leibniz Inst DSMZ German Collect Microorganisms &, D-38124 Braunschweig, Germany
[4] Braunschweig Univ Technol, Microbiol, D-38106 Braunschweig, Germany
关键词
Agrobacterium; bacteriology; detection; disease control and pest management; ecology and epidemiology; etiology phylogeny; Ti plasmid; tumorigenic bacteria; TISSUE PROLIFERATION; SYSTEMIC MOVEMENT; PCR PRIMERS; WEB SERVER; HOST-RANGE; DIVERSITY; TUMEFACIENS; BACTERIA; VITIS; DNA;
D O I
10.1094/PHYTO-05-19-0167-R
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Crown gall is an economically important and widespread plant disease caused by tumorigenic bacteria that are commonly affiliated within the genera Agrobacterium, Allorhizobium, and Rhizobium. Although crown gall disease was reported to occur on rhododendron, literature data regarding this disease are limited. In this study, an atypical group of tumorigenic agrobacteria belonging to the genus Rhizobium was identified as a causative agent of crown gall on rhododendron. Genome analysis suggested that tumorigenic bacteria isolated from rhododendron tumors are most closely related to Rhizobium tumorigenes, a new tumorigenic bacterium discovered recently on blackberry in Serbia. However, R. tumorigenes and novel rhododendron strains belong to separate species and form a homogenous clade within the genus Rhizobium, which we named the "tumorigenes" clade. Moreover, tumorigenic bacteria isolated from rhododendron seem to carry a distinct tumor-inducing (Ti) plasmid, compared with those carried by R. tumorigenes strains and Ti plasmids described thus far. To facilitate rapid identification of bacteria belonging to the "tumorigenes" clade, regardless of whether they are pathogenic or not, a conventional PCR method targeting putative chromosomal gene-encoding flagellin protein FlaA was developed in this study. Finally, our results suggested that this novel group of tumorigenic agrobacteria occurs on blueberry but it cannot be excluded that it is distributed more widely.
引用
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页码:1840 / 1848
页数:9
相关论文
共 63 条
[1]   The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update [J].
Afgan, Enis ;
Baker, Dannon ;
Batut, Berenice ;
van den Beek, Marius ;
Bouvier, Dave ;
Cech, Martin ;
Chilton, John ;
Clements, Dave ;
Coraor, Nate ;
Gruening, Bjoern A. ;
Guerler, Aysam ;
Hillman-Jackson, Jennifer ;
Hiltemann, Saskia ;
Jalili, Vahid ;
Rasche, Helena ;
Soranzo, Nicola ;
Goecks, Jeremy ;
Taylor, James ;
Nekrutenko, Anton ;
Blankenberg, Daniel .
NUCLEIC ACIDS RESEARCH, 2018, 46 (W1) :W537-W544
[2]   NEW LOOK AT STATISTICAL-MODEL IDENTIFICATION [J].
AKAIKE, H .
IEEE TRANSACTIONS ON AUTOMATIC CONTROL, 1974, AC19 (06) :716-723
[3]   BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons [J].
Alikhan, Nabil-Fareed ;
Petty, Nicola K. ;
Ben Zakour, Nouri L. ;
Beatson, Scott A. .
BMC GENOMICS, 2011, 12
[4]   Diversity among agrobacteria isolated from diseased plants of blueberry (Vaccinium corymbosum) in Argentina [J].
Alippi, Adriana M. ;
Lopez, Ana C. ;
Balatti, Pedro A. .
EUROPEAN JOURNAL OF PLANT PATHOLOGY, 2012, 134 (02) :415-430
[5]   Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques [J].
Aljanabi, SM ;
Martinez, I .
NUCLEIC ACIDS RESEARCH, 1997, 25 (22) :4692-4693
[6]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[7]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[8]   Piggery manure used for soil fertilization is a reservoir for transferable antibiotic resistance plasmids [J].
Binh, Chu Thi Thanh ;
Heuer, Holger ;
Kaupenjohann, Martin ;
Smalla, Kornelia .
FEMS MICROBIOLOGY ECOLOGY, 2008, 66 (01) :25-37
[9]  
Bouzar H, 1995, Methods Mol Biol, V44, P9
[10]  
Bristow P. R., 1995, COMPENDIUM BLUEBERRY, P48