In Silico Design, Drug-Likeness and ADMET Properties Estimation of Some Substituted Thienopyrimidines as HCV NS3/4A Protease Inhibitors

被引:7
作者
Ejeh, Stephen [1 ]
Uzairu, Adamu [1 ]
Shallangwa, Gideon A. [1 ]
Abechi, Stephen E. [1 ]
机构
[1] Ahmadu Bello Univ, Dept Chem, PMB 1044, Zaria, Kaduna, Nigeria
来源
CHEMISTRY AFRICA-A JOURNAL OF THE TUNISIAN CHEMICAL SOCIETY | 2021年 / 4卷 / 03期
关键词
In silico design; Molecular docking; PaDEL-descriptors; ADMET features; HEPATITIS-C VIRUS; CLASSIFICATION; VALIDATION; 3D-QSAR;
D O I
10.1007/s42250-021-00250-y
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In this study, we established a QSAR model for studying the antiviral activity of substituted thienopyrimidines derivatives as HCV NS3/4A protease inhibitors. We engaged in random analysis to split the datasets. Statistically, a robust model was generated with R-2, Q(2), and R-pred(2) values of 0.738, 0.637, and 0.692 respectively. The dependability of these models was verified by appropriate testing limits, and this model also met the Golbraikh and Tropsha standard model conditions. The data derived from the established model was employed in suggesting some promising inhibitors of HCV NS3/4A protease and the designed ligand were found to be excellently fixed when anchored with the target and it has the least binding energy of - 197.8 kcal/mol compared to the binding energy of reference ligand (Voxilaprevir) which is - 159.4 kcal/mol. Our analysis indicates that the designed molecules possess the required drug-likeness, bioavailability, synthetic accessibility, and ADMET features.
引用
收藏
页码:563 / 574
页数:12
相关论文
共 31 条
[1]   Anti-HCV protease potential of endophytic fungi and cytotoxic activity [J].
Abou El-Kassem, Lamia ;
Hawas, Usama W. ;
El-Souda, Sahar ;
Ahmed, Eman F. ;
El-Khateeb, Wail ;
Fayad, Walid .
BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY, 2019, 19
[2]   Quantitative structure-activity relationship (QSAR) and design of novel ligands that demonstrate high potency and target selectivity as protein tyrosine phosphatase 1B (PTP 1B) inhibitors as an effective strategy used to model anti-diabetic agents [J].
Arthur, David Ebuka ;
Ejeh, Stephen ;
Uzairu, Adamu .
JOURNAL OF RECEPTORS AND SIGNAL TRANSDUCTION, 2020, 40 (06) :501-520
[3]   Quantitative structure-activity relationship study on potent anticancer compounds against MOLT-4 and P388 leukemia cell lines [J].
Arthur, David Ebuka ;
Uzairu, Adamu ;
Mamza, Paul ;
Abechi, Stephen .
JOURNAL OF ADVANCED RESEARCH, 2016, 7 (05) :823-837
[4]   Desirable Characteristics of Hepatitis C Treatment Regimens: A Review of What We Have and What We Need [J].
Bidell M.R. ;
McLaughlin M. ;
Faragon J. ;
Morse C. ;
Patel N. .
Infectious Diseases and Therapy, 2016, 5 (3) :299-312
[5]  
Brown D J., 1984, Comprehensive Heterocyclic Chemistry
[6]   Sofosbuvir/Velpatasvir: The First Pangenotypic Direct-Acting Antiviral Combination for Hepatitis C [J].
Chahine, Elias B. ;
Sucher, Allana J. ;
Hemstreet, Brian A. .
ANNALS OF PHARMACOTHERAPY, 2017, 51 (01) :44-53
[7]   Epidemiology and management of hepatitis C virus infections in immigrant populations [J].
Coppola, Nicola ;
Alessio, Loredana ;
Onorato, Lorenzo ;
Sagnelli, Caterina ;
Macera, Margherita ;
Sagnelli, Evangelista ;
Pisaturo, Mariantonietta .
INFECTIOUS DISEASES OF POVERTY, 2019, 8 (1)
[8]   Molecular interactions between mitochondrial membrane proteins and the C-terminal domain of PB1-F2: an in silico approach [J].
Danishuddin, Mohd ;
Khan, Shahper N. ;
Khan, Asad U. .
JOURNAL OF MOLECULAR MODELING, 2010, 16 (03) :535-541
[9]   Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs [J].
Eriksson, L ;
Jaworska, J ;
Worth, AP ;
Cronin, MTD ;
McDowell, RM ;
Gramatica, P .
ENVIRONMENTAL HEALTH PERSPECTIVES, 2003, 111 (10) :1361-1375
[10]   History of the Harvard ChemDraw Project [J].
Evans, David A. .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2014, 53 (42) :11140-11145