Atomic force microscopy;
density functional theory;
frozen density embedding theory;
pentacene;
Cu2N;
CO tip;
ELECTRONIC-STRUCTURE CALCULATIONS;
CHEMICAL-STRUCTURE;
KINETIC-ENERGY;
MOLECULE;
D O I:
10.1021/acs.nanolett.6b00741
中图分类号:
O6 [化学];
学科分类号:
0703 ;
摘要:
We present an efficient first-principles method for simulating noncontact atomic force microscopy (nc-AFM) images using a "frozen density" embedding theory. Frozen density embedding theory enables one to efficiently compute the tip-sample interaction by considering a sample as a frozen external field. This method reduces the extensive computational load of first principles AFM simulations by avoiding consideration of the entire tip-sample system and focusing on the tip alone. We demonstrate that our simulation with frozen density embedding theory accurately reproduces full density functional theory simulations of freestanding hydrocarbon molecules while the computational time is significantly reduced. Our method also captures the electronic effect of a Cu(111) substrate on the AFM image of pentacene and reproduces the experimental AFM image of Cu2N on a Cu(100) surface. This approach is applicable for theoretical imaging applications on large molecules, two-dimensional materials, and materials surfaces.
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
UPV EHU Mat Phys Ctr, Ctr Fis Mat CSIC, E-20018 San Sebastian, SpainUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
de Oteyza, Dimas G.
;
Gorman, Patrick
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Gorman, Patrick
;
Chen, Yen-Chia
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mat Sci Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Chen, Yen-Chia
;
Wickenburg, Sebastian
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mat Sci Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Wickenburg, Sebastian
;
Riss, Alexander
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Riss, Alexander
;
Mowbray, Duncan J.
论文数: 0引用数: 0
h-index: 0
机构:
Donostia Int Phys Ctr, E-20018 San Sebastian, Spain
Univ Pais Vasco UPV, EHU, Nanobio Spect Grp, E-20018 San Sebastian, Spain
Univ Pais Vasco UPV, EHU, ETSF Sci Dev Ctr, Dpto Fis Mat, E-20018 San Sebastian, SpainUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Mowbray, Duncan J.
;
Etkin, Grisha
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Etkin, Grisha
;
Pedramrazi, Zahra
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Pedramrazi, Zahra
;
Tsai, Hsin-Zon
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Tsai, Hsin-Zon
;
Rubio, Angel
论文数: 0引用数: 0
h-index: 0
机构:
UPV EHU Mat Phys Ctr, Ctr Fis Mat CSIC, E-20018 San Sebastian, Spain
Donostia Int Phys Ctr, E-20018 San Sebastian, Spain
Univ Pais Vasco UPV, EHU, Nanobio Spect Grp, E-20018 San Sebastian, Spain
Univ Pais Vasco UPV, EHU, ETSF Sci Dev Ctr, Dpto Fis Mat, E-20018 San Sebastian, SpainUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Rubio, Angel
;
Crommie, Michael F.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mat Sci Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Crommie, Michael F.
;
Fischer, Felix R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mat Sci Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
UPV EHU Mat Phys Ctr, Ctr Fis Mat CSIC, E-20018 San Sebastian, SpainUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
de Oteyza, Dimas G.
;
Gorman, Patrick
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Gorman, Patrick
;
Chen, Yen-Chia
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mat Sci Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Chen, Yen-Chia
;
Wickenburg, Sebastian
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mat Sci Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Wickenburg, Sebastian
;
Riss, Alexander
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Riss, Alexander
;
Mowbray, Duncan J.
论文数: 0引用数: 0
h-index: 0
机构:
Donostia Int Phys Ctr, E-20018 San Sebastian, Spain
Univ Pais Vasco UPV, EHU, Nanobio Spect Grp, E-20018 San Sebastian, Spain
Univ Pais Vasco UPV, EHU, ETSF Sci Dev Ctr, Dpto Fis Mat, E-20018 San Sebastian, SpainUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Mowbray, Duncan J.
;
Etkin, Grisha
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Etkin, Grisha
;
Pedramrazi, Zahra
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Pedramrazi, Zahra
;
Tsai, Hsin-Zon
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Tsai, Hsin-Zon
;
Rubio, Angel
论文数: 0引用数: 0
h-index: 0
机构:
UPV EHU Mat Phys Ctr, Ctr Fis Mat CSIC, E-20018 San Sebastian, Spain
Donostia Int Phys Ctr, E-20018 San Sebastian, Spain
Univ Pais Vasco UPV, EHU, Nanobio Spect Grp, E-20018 San Sebastian, Spain
Univ Pais Vasco UPV, EHU, ETSF Sci Dev Ctr, Dpto Fis Mat, E-20018 San Sebastian, SpainUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Rubio, Angel
;
Crommie, Michael F.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mat Sci Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA
Crommie, Michael F.
;
Fischer, Felix R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Mat Sci Div, Berkeley, CA 94720 USAUniv Calif Berkeley, Dept Phys, Berkeley, CA 94720 USA