METAL: fast and efficient meta-analysis of genomewide association scans

被引:3361
作者
Willer, Cristen J. [1 ]
Li, Yun [1 ,2 ]
Abecasis, Goncalo R. [1 ]
机构
[1] Univ Michigan, Dept Biostat, Ann Arbor, MI 48109 USA
[2] Univ N Carolina, Dept Biostat, Dept Genet, Chapel Hill, NC 27515 USA
关键词
WIDE ASSOCIATION; LOCI; VARIANTS;
D O I
10.1093/bioinformatics/btq340
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
METAL provides a computationally efficient tool for meta-analysis of genome-wide association scans, which is a commonly used approach for improving power complex traits gene mapping studies. METAL provides a rich scripting interface and implements efficient memory management to allow analyses of very large data sets and to support a variety of input file formats.
引用
收藏
页码:2190 / 2191
页数:2
相关论文
共 14 条
  • [1] THE COMBINATION OF ESTIMATES FROM DIFFERENT EXPERIMENTS
    COCHRAN, WG
    [J]. BIOMETRICS, 1954, 10 (01) : 101 - 129
  • [2] Practical aspects of imputation-driven meta-analysis of genome-wide association studies
    de Bakker, Paul I. W.
    Ferreira, Manuel A. R.
    Jia, Xiaoming
    Neale, Benjamin M.
    Raychaudhuri, Soumya
    Voight, Benjamin F.
    [J]. HUMAN MOLECULAR GENETICS, 2008, 17 : R122 - R128
  • [3] Genomic control for association studies
    Devlin, B
    Roeder, K
    [J]. BIOMETRICS, 1999, 55 (04) : 997 - 1004
  • [4] Common variants at 30 loci contribute to polygenic dyslipidemia
    Kathiresan, Sekar
    Willer, Cristen J.
    Peloso, Gina M.
    Demissie, Serkalem
    Musunuru, Kiran
    Schadt, Eric E.
    Kaplan, Lee
    Bennett, Derrick
    Li, Yun
    Tanaka, Toshiko
    Voight, Benjamin F.
    Bonnycastle, Lori L.
    Jackson, Anne U.
    Crawford, Gabriel
    Surti, Aarti
    Guiducci, Candace
    Burtt, Noel P.
    Parish, Sarah
    Clarke, Robert
    Zelenika, Diana
    Kubalanza, Kari A.
    Morken, Mario A.
    Scott, Laura J.
    Stringham, Heather M.
    Galan, Pilar
    Swift, Amy J.
    Kuusisto, Johanna
    Bergman, Richard N.
    Sundvall, Jouko
    Laakso, Markku
    Ferrucci, Luigi
    Scheet, Paul
    Sanna, Serena
    Uda, Manuela
    Yang, Qiong
    Lunetta, Kathryn L.
    Dupuis, Josee
    de Bakker, Paul I. W.
    O'Donnell, Christopher J.
    Chambers, John C.
    Kooner, Jaspal S.
    Hercberg, Serge
    Meneton, Pierre
    Lakatta, Edward G.
    Scuteri, Angelo
    Schlessinger, David
    Tuomilehto, Jaakko
    Collins, Francis S.
    Groop, Leif
    Altshuler, David
    [J]. NATURE GENETICS, 2009, 41 (01) : 56 - 65
  • [5] Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans
    Kathiresan, Sekar
    Melander, Olle
    Guiducci, Candace
    Surti, Aarti
    Burtt, Noel P.
    Rieder, Mark J.
    Cooper, Gregory M.
    Roos, Charlotta
    Voight, Benjamin F.
    Havulinna, Aki S.
    Wahlstrand, Bjorn
    Hedner, Thomas
    Corella, Dolores
    Tai, E. Shyong
    Ordovas, Jose M.
    Berglund, Goran
    Vartiainen, Erkki
    Jousilahti, Pekka
    Hedblad, Bo
    Taskinen, Marja-Riitta
    Newton-Cheh, Christopher
    Salomaa, Veikko
    Peltonen, Leena
    Groop, Leif
    Altshuler, David M.
    Orho-Melander, Marju
    [J]. NATURE GENETICS, 2008, 40 (02) : 189 - 197
  • [6] Meta-Analysis of Genome-Wide Association Studies: No Efficiency Gain in Using Individual Participant Data
    Lin, D. Y.
    Zeng, D.
    [J]. GENETIC EPIDEMIOLOGY, 2010, 34 (01) : 60 - 66
  • [7] Genome-wide association study identifies eight loci associated with blood pressure
    Newton-Cheh, Christopher
    Johnson, Toby
    Gateva, Vesela
    Tobin, Martin D.
    Bochud, Murielle
    Coin, Lachlan
    Najjar, Samer S.
    Zhao, Jing Hua
    Heath, Simon C.
    Eyheramendy, Susana
    Papadakis, Konstantinos
    Voight, Benjamin F.
    Scott, Laura J.
    Zhang, Feng
    Farrall, Martin
    Tanaka, Toshiko
    Wallace, Chris
    Chambers, John C.
    Khaw, Kay-Tee
    Nilsson, Peter
    van der Harst, Pim
    Polidoro, Silvia
    Grobbee, Diederick E.
    Onland-Moret, N. Charlotte
    Bots, Michiel L.
    Wain, Louise V.
    Elliott, Katherine S.
    Teumer, Alexander
    Luan, Jian'an
    Lucas, Gavin
    Kuusisto, Johanna
    Burton, Paul R.
    Hadley, David
    McArdle, Wendy L.
    Brown, Morris
    Dominiczak, Anna
    Newhouse, Stephen J.
    Samani, Nilesh J.
    Webster, John
    Zeggini, Eleftheria
    Beckmann, Jacques S.
    Bergmann, Sven
    Lim, Noha
    Song, Kijoung
    Vollenweider, Peter
    Waeber, Gerard
    Waterworth, Dawn M.
    Yuan, Xin
    Groop, Leif
    Orho-Melander, Marju
    [J]. NATURE GENETICS, 2009, 41 (06) : 666 - 676
  • [8] Variants in MTNR1B influence fasting glucose levels
    Prokopenko, Inga
    Langenberg, Claudia
    Florez, Jose C.
    Saxena, Richa
    Soranzo, Nicole
    Thorleifsson, Gudmar
    Loos, Ruth J. F.
    Manning, Alisa K.
    Jackson, Anne U.
    Aulchenko, Yurii
    Potter, Simon C.
    Erdos, Michael R.
    Sanna, Serena
    Hottenga, Jouke-Jan
    Wheeler, Eleanor
    Kaakinen, Marika
    Lyssenko, Valeriya
    Chen, Wei-Min
    Ahmadi, Kourosh
    Beckmann, Jacques S.
    Bergman, Richard N.
    Bochud, Murielle
    Bonnycastle, Lori L.
    Buchanan, Thomas A.
    Cao, Antonio
    Cervino, Alessandra
    Coin, Lachlan
    Collins, Francis S.
    Crisponi, Laura
    De Geus, Eco J. C.
    Dehghan, Abbas
    Deloukas, Panos
    Doney, Alex S. F.
    Elliott, Paul
    Freimer, Nelson
    Gateva, Vesela
    Herder, Christian
    Hofman, Albert
    Hughes, Thomas E.
    Hunt, Sarah
    Illig, Thomas
    Inouye, Michael
    Isomaa, Bo
    Johnson, Toby
    Kong, Augustine
    Krestyaninova, Maria
    Kuusisto, Johanna
    Laakso, Markku
    Lim, Noha
    Lindblad, Ulf
    [J]. NATURE GENETICS, 2009, 41 (01) : 77 - 81
  • [9] A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants
    Scott, Laura J.
    Mohlke, Karen L.
    Bonnycastle, Lori L.
    Willer, Cristen J.
    Li, Yun
    Duren, William L.
    Erdos, Michael R.
    Stringham, Heather M.
    Chines, Peter S.
    Jackson, Anne U.
    Prokunina-Olsson, Ludmila
    Ding, Chia-Jen
    Swift, Amy J.
    Narisu, Narisu
    Hu, Tianle
    Pruim, Randall
    Xiao, Rui
    Li, Xiao-Yi
    Conneely, Karen N.
    Riebow, Nancy L.
    Sprau, Andrew G.
    Tong, Maurine
    White, Peggy P.
    Hetrick, Kurt N.
    Barnhart, Michael W.
    Bark, Craig W.
    Goldstein, Janet L.
    Watkins, Lee
    Xiang, Fang
    Saramies, Jouko
    Buchanan, Thomas A.
    Watanabe, Richard M.
    Valle, Timo T.
    Kinnunen, Leena
    Abecasis, Gonalo R.
    Pugh, Elizabeth W.
    Doheny, Kimberly F.
    Bergman, Richard N.
    Tuomilehto, Jaakko
    Collins, Francis S.
    Boehnke, Michael
    [J]. SCIENCE, 2007, 316 (5829) : 1341 - 1345
  • [10] Optimal designs for two-stage genome-wide association studies
    Skoll, Andrew D.
    Scott, Laura J.
    Abecasis, Goncalo R.
    Boehnke, Michael
    [J]. GENETIC EPIDEMIOLOGY, 2007, 31 (07) : 776 - 788