Mid- and near-infrared spectra of conformers of H-Pro-Trp-OH

被引:32
作者
Haeber, Thomas [1 ]
Seefeld, Kai [1 ]
Kleinermanns, Karl [1 ]
机构
[1] Univ Dusseldorf, Inst Phys Chem, D-40225 Dusseldorf, Germany
关键词
D O I
10.1021/jp070571e
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present near- and mid-infrared-UV double resonance spectra of the natural dipeptide H-Pro-Trp-OH. Two conformers are present in the supersonic expansion: a stretched conformer with fully extended backbone and a folded conformer with an OH center dot center dot center dot OCpep hydrogen bond. Both conformers are stabilized by dispersion interaction between indole ring and peptide backbone and a NHpep/N-proline contact. The vibrational and conformational assignment is supported by DFT and MP2 calculations. An adequate description of the energetic order of different conformers requires the explicit inclusion of dispersion and geometry optimization at the MP2 level. We will address the very sensitivity of the observed conformations to the structure of the end groups.
引用
收藏
页码:3038 / 3046
页数:9
相关论文
共 63 条
[1]   Discrimination between diastereoisomeric dipeptides by IR-UV double resonance spectroscopy and ab initio calculations [J].
Abo-Riziq, AG ;
Bushnell, JE ;
Crews, B ;
Callahan, MP ;
Grace, L ;
De Vries, MS .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2005, 105 (04) :437-445
[2]   Spectroscopy of isolated gramicidin peptides [J].
Abo-Riziq, Ali ;
Crews, Bridgit O. ;
Callahan, Michael P. ;
Grace, Louis ;
de Vries, Mattanjah S. .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2006, 45 (31) :5166-5169
[3]   Folding structures of isolated peptides as revealed by gas-phase mid-infrared spectroscopy [J].
Bakker, JM ;
Plützer, C ;
Hünig, I ;
Häber, T ;
Compagnon, I ;
von Helden, G ;
Meijer, G ;
Kleinermanns, K .
CHEMPHYSCHEM, 2005, 6 (01) :120-128
[4]   Fingerprint IR spectroscopy to probe amino acid conformations in the gas phase [J].
Bakker, JM ;
Aleese, LM ;
Meijer, G ;
von Helden, G .
PHYSICAL REVIEW LETTERS, 2003, 91 (20)
[5]  
Balbach J., 2000, MECH PROTEIN FOLDING
[6]   Peptide models -: XXIV:: An ab initio study on N-formyl-L-prolinamide with trans peptide bond.: The existence or non-existence of αL and εL conformations [J].
Baldoni, HA ;
Rodriguez, AM ;
Zamora, MA ;
Zamarbide, GN ;
Enriz, RD ;
Farkas, O ;
Csàszàr, P ;
Torday, LL ;
Sosa, CP ;
Jàkli, I ;
Perzel, A ;
Papp, JG ;
Hollosi, M ;
Csizmadia, IG .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 1999, 465 (01) :79-91
[7]   Quantum mechanical study of the conformational behavior of proline and 4R-hydroxyproline dipeptide analogues in vacuum and in aqueous solution [J].
Benzi, C ;
Improta, R ;
Scalmani, G ;
Barone, V .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2002, 23 (03) :341-350
[8]   FLUORESCENCE SPECTROSCOPY OF JET-COOLED TRYPTOPHAN PEPTIDES [J].
CABLE, JR ;
TUBERGEN, MJ ;
LEVY, DH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1989, 111 (25) :9032-9039
[9]   LASER DESORPTION MOLECULAR-BEAM SPECTROSCOPY - THE ELECTRONIC-SPECTRA OF TRYPTOPHAN PEPTIDES IN THE GAS-PHASE [J].
CABLE, JR ;
TUBERGEN, MJ ;
LEVY, DH .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1987, 109 (20) :6198-6199
[10]   Hydrated complexes of tryptophan:: ion dip infrared spectroscopy in the 'molecular fingerprint' region, 100-2000 cm-1 [J].
Çarçabal, P ;
Kroemer, RT ;
Snoek, LC ;
Simons, JP ;
Bakker, JM ;
Compagnon, I ;
Meijer, G ;
von Helden, G .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2004, 6 (19) :4546-4552