Nonlinear analysis of sequence repeats of multi-domain proteins

被引：8
|
作者：
Huang, Yanzhao [1 ]
Li, Mingfeng [1 ]
Xiao, Yi [1 ]
机构：
[1] Huazhong Univ Sci & Technol, Dept Phys, Biomol Phys & Modeling Grp, Wuhan 430074, Peoples R China
来源：
CHAOS SOLITONS & FRACTALS | 2007年 / 34卷 / 03期
基金：
中国国家自然科学基金;
关键词：
D O I：
10.1016/j.chaos.2006.03.080
中图分类号：
O1 [数学];
学科分类号：
0701 ; 070101 ;
摘要：
Many multi-domain proteins have repetitive three-dimensional structures but nearly-random amino acid sequences. In the present paper, by using a modified recurrence plot proposed by us previously, we show that these amino acid sequences have hidden repetitions in fact. These results indicate that the repetitive domain structures are encoded by the repetitive sequences. This also gives a method to detect the repetitive domain structures directly from amino acid sequences. (C) 2006 Elsevier Ltd. All rights reserved.
引用
收藏
页码：782 / 786
页数：5
相关论文
共 50 条
  • [41] A segmental labeling strategy for unambiguous determination of domain–domain interactions of large multi-domain proteins
    Jianglei Chen
    Jianjun Wang
    Journal of Biomolecular NMR, 2011, 50 : 403 - 410
  • [42] Learning to Learn and Remember Super Long Multi-Domain Task Sequence
    Wang, Zhenyi
    Shen, Li
    Duan, Tiehang
    Zhan, Donglin
    Fang, Le
    Gao, Mingchen
    2022 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 2022, : 7972 - 7982
  • [43] Characterization of Multi-Domain Proteins in the ArsR/SmtB Family of Transcriptional Regulators
    Roy, Rima
    Patra, Surajit
    Samanta, Saikat
    Saha, Rudra P.
    BIOLOGY BULLETIN, 2024, 51 (01) : 66 - 77
  • [44] Segmental, Domain-Selective Perdeuteration and Small-Angle Neutron Scattering for Structural Analysis of Multi-Domain Proteins
    Sonntag, Miriam
    Jagtap, Pravin Kumar Ankush
    Simon, Bernd
    Appavou, Marie-Sousai
    Geerlof, Arie
    Stehle, Ralf
    Gabel, Frank
    Hennig, Janosch
    Sattler, Michael
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2017, 56 (32) : 9322 - 9325
  • [45] Efficient segmental isotope labeling of multi-domain proteins using Sortase A
    Freiburger, Lee
    Sonntag, Miriam
    Hennig, Janosch
    Li, Jian
    Zou, Peijian
    Sattler, Michael
    JOURNAL OF BIOMOLECULAR NMR, 2015, 63 (01) : 1 - 8
  • [46] Landscape of Intertwined Associations in Multi-Domain Homo-Oligomeric Proteins
    MacKinnon, Stephen S.
    Wodak, Shoshana J.
    JOURNAL OF MOLECULAR BIOLOGY, 2015, 427 (02) : 350 - 370
  • [47] Annotation transfer for genomics: Measuring functional divergence in multi-domain proteins
    Hegyi, H
    Gerstein, M
    GENOME RESEARCH, 2001, 11 (10) : 1632 - 1640
  • [48] Conformation-correlation induced cooperativity in multi-domain motor proteins
    Liu, MS
    Todd, BD
    Sadus, RJ
    BIOPHYSICAL JOURNAL, 2005, 88 (01) : 556A - 556A
  • [49] Efficient segmental isotope labeling of multi-domain proteins using Sortase A
    Lee Freiburger
    Miriam Sonntag
    Janosch Hennig
    Jian Li
    Peijian Zou
    Michael Sattler
    Journal of Biomolecular NMR, 2015, 63 : 1 - 8
  • [50] Characterization of Multi-Domain Proteins in the ArsR/SmtB Family of Transcriptional Regulators
    Surajit Rima Roy
    Saikat Patra
    Rudra P. Samanta
    Biology Bulletin, 2024, 51 : 66 - 77
12345