Sequencing and analysis of complete mitochondrial genome of Apodemus draco (Rodentia: Arvicolinae)

被引:3
作者
Wei, Haixue [1 ]
Jia, Qiang [1 ]
Li, Fengjun [1 ]
Liu, Yongcheng [1 ]
Chen, Shunde [1 ]
Yong, Bin [1 ]
机构
[1] Sichuan Normal Univ, Coll Life Sci, Chengdu 610066, Peoples R China
基金
中国国家自然科学基金; 中国博士后科学基金;
关键词
Apodemus draco; complete mitochondrial genome; phylogeny; South China Field Mouse;
D O I
10.3109/19401736.2015.1046173
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The genus Apodemus are the most common small rodents in fields. They are also one of the best species for biogeographic study and understanding the environmental changes. In this study, the complete mitochondrial genome sequence of Apodemus draco is determined. The mitogenome is 16 220 bp in length and contains 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and a control region, with a base composition of 35.1% A, 29.0% T, 23.8% C and 12.1% G. The nucleotide sequence data of 12 heavy-strand protein-coding genes of Apodemus draco and other 23 rodents were used for mitochondrial genome phylogenetic analyses. The monophyly of the genus Apodemus was well supported with sister to the genus Mus. Bayesian analysis also suggested that Apodemus draco was a sister to Apodemus latronum. The present study may facilitate further investigation of the molecular evolution and biogeographic study of the genus Apodemus.
引用
收藏
页码:2740 / 2741
页数:2
相关论文
共 12 条
[1]  
Chen SD, 2015, COMPLETE MITOCHONDRI, DOI [10.3109/19401736.2015.1036246, DOI 10.3109/19401736.2015.1036246]
[2]   jModelTest 2: more models, new heuristics and parallel computing [J].
Darriba, Diego ;
Taboada, Guillermo L. ;
Doallo, Ramon ;
Posada, David .
NATURE METHODS, 2012, 9 (08) :772-772
[3]   BEAST: Bayesian evolutionary analysis by sampling trees [J].
Drummond, Alexei J. ;
Rambaut, Andrew .
BMC EVOLUTIONARY BIOLOGY, 2007, 7 (1)
[4]   Complete mitochondrial genome sequence of the Chinese scrub vole (Neodon irene) [J].
Fan, Longqing ;
Fan, Zhenxin ;
Yue, Hao ;
Zhang, Xiuyue ;
Liu, Yang ;
Sun, Zhiyu ;
Liu, Shaoying ;
Yue, Bisong .
MITOCHONDRIAL DNA, 2011, 22 (03) :50-52
[5]   Complete mitochondrial genome of a new vole Proedromys liangshanensis (Rodentia: Cricetidae) and phylogenetic analysis with related species: Are there implications for the validity of the genus Proedromys? [J].
Hao, Haibang ;
Liu, Shaoying ;
Zhang, Xiuyue ;
Chen, Weicai ;
Song, Zhaobin ;
Peng, Hongyuan ;
Liu, Yang ;
Yue, Bisong .
MITOCHONDRIAL DNA, 2011, 22 (1-2) :28-34
[6]   Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences [J].
Jaarola, M ;
Martínková, N ;
Gündüz, I ;
Brunhoff, C ;
Zima, J ;
Nadachowski, A ;
Amori, G ;
Bulatova, NS ;
Chondropoulos, B ;
Fraguedakis-Tsolis, S ;
González-Esteban, J ;
López-Fuster, MJ ;
Kandaurov, AS ;
Kefelioglu, H ;
Mathias, MD ;
Villate, I ;
Searle, JB .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2004, 33 (03) :647-663
[7]  
Molur S., 2005, Status of South Asian Non-volant Small Mammals: Conservation Assessment Management Plan (CAMP) Workshop Report
[8]  
MUSSER G.G., 2005, MAMMAL SPECIES WORLD, V2, P894
[9]   A phylogenetic view on species radiation in Apodemus inferred from variation of nuclear and mitochondrial genes [J].
Serizawa, K ;
Suzuki, H ;
Tsuchiya, K .
BIOCHEMICAL GENETICS, 2000, 38 (1-2) :27-40
[10]  
Smith Andrew T., 2008, P1