Putative markers for the detection of early-stage bladder cancer selected by urine metabolomics

被引:17
作者
Lin, Jia-You [1 ]
Juo, Bao-Rong [2 ]
Yeh, Yu-Hsuan [3 ,4 ]
Fu, Shu-Hsuan [2 ]
Chen, Yi-Ting [2 ,5 ]
Chen, Chien-Lun [6 ,7 ]
Wu, Kun-Pin [1 ]
机构
[1] Natl Yang Ming Chiao Tung Univ, Inst Biomed Informat, Taipei 11221, Taiwan
[2] Chang Gung Mem Hosp, Dept Urol, Taoyuan 33305, Taiwan
[3] Natl Yang Ming Chiao Tung Univ, Dept Life Sci, Taipei 11221, Taiwan
[4] Natl Yang Ming Chiao Tung Univ, Inst Genome Sci, Taipei 11221, Taiwan
[5] Chang Gung Univ, Dept Biomed Sci, Taoyuan 33302, Taiwan
[6] Chang Gung Mem Hosp, Dept Urol, Taoyuan 33305, Taiwan
[7] Chang Gung Univ, Coll Med, Taoyuan 33302, Taiwan
关键词
Biomarkers; Metabolomics; Gas chromatography-mass spectrometry; Omics data analysis; Bioinformatics; PENTOSE-PHOSPHATE PATHWAY; ALDOSE REDUCTASE; TRANSALDOLASE DEFICIENCY; DIABETES-MELLITUS; MASS-SPECTROMETRY; INBORN ERROR; GC-MS; DIAGNOSIS; SERUM; INFLUENZA;
D O I
10.1186/s12859-021-04235-z
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
BackgroundEarly detection of bladder cancer remains challenging because patients with early-stage bladder cancer usually have no incentive to take cytology or cystoscopy tests if they are asymptomatic. Our goal is to find non-invasive marker candidates that may help us gain insight into the metabolism of early-stage bladder cancer and be examined in routine health checks.ResultsWe acquired urine samples from 124 patients diagnosed with early-stage bladder cancer or hernia (63 cancer patients and 61 controls). In which 100 samples were included in our marker discovery cohort, and the remaining 24 samples were included in our independent test cohort. We obtained metabolic profiles of 922 compounds of the samples by gas chromatography-mass spectrometry. Based on the metabolic profiles of the marker discovery cohort, we selected marker candidates using Wilcoxon rank-sum test with Bonferroni correction and leave-one-out cross-validation; we further excluded compounds detected in less than 60% of the bladder cancer samples. We finally selected eight putative markers. The abundance of all the eight markers in bladder cancer samples was high but extremely low in hernia samples. Moreover, the up-regulation of these markers might be in association with sugars and polyols metabolism.ConclusionsIn the present study, comparative urine metabolomics selected putative metabolite markers for the detection of early-stage bladder cancer. The suggested relations between early-stage bladder cancer and sugars and polyols metabolism may create opportunities for improving the detection of bladder cancer.
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页数:16
相关论文
共 47 条
[1]   Bladder Cancer Incidence and Mortality: A Global Overview and Recent Trends [J].
Antoni, Sebastien ;
Ferlay, Jacques ;
Soerjomataram, Isabelle ;
Znaor, Ariana ;
Jemal, Ahmedin ;
Bray, Freddie .
EUROPEAN UROLOGY, 2017, 71 (01) :96-108
[2]  
Banne E, 2016, JIMD REP, V26, P31, DOI 10.1007/8904_2015_474
[3]  
Bonferroni Carlo, 1936, Istituto Superiore di Scienze Economiche e Commericiali di Firenze, V8, P3, DOI DOI 10.4135/9781412961288.N455
[4]   Mutations in TKT Are the Cause of a Syndrome Including Short Stature, Developmental Delay, and Congenital Heart Defects [J].
Boyle, Lia ;
Wamelink, Mirjam M. C. ;
Salomons, Gajja S. ;
Roos, Birthe ;
Pop, Ana ;
Dauber, Andrew ;
Hwa, Vivian ;
Andrew, Melissa ;
Douglas, Jessica ;
Feingold, Murray ;
Kramer, Nancy ;
Saitta, Sulagna ;
Retterer, Kyle ;
Cho, Megan T. ;
Begtrup, Amber ;
Monaghan, Kristin G. ;
Wynn, Julia ;
Chung, Wendy K. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2016, 98 (06) :1235-1242
[5]   Comparative and Targeted Proteomic Analyses of Urinary Microparticles from Bladder Cancer and Hernia Patients [J].
Chen, Chien-Lun ;
Lai, Yue-Fan ;
Tang, Petrus ;
Chien, Kun-Yi ;
Yu, Jau-Song ;
Tsai, Cheng-Han ;
Chen, Hsiao-Wei ;
Wu, Chih-Ching ;
Chung, Ting ;
Hsu, Chia-Wei ;
Chen, Chi-De ;
Chang, Yu-Sun ;
Chang, Phei-Lang ;
Chen, Yi-Ting .
JOURNAL OF PROTEOME RESEARCH, 2012, 11 (12) :5611-5629
[6]   Metabolomics: Available results, current research projects in breast cancer, and future applications [J].
Claudino, Wederson Marcos ;
Quattrone, Alessandro ;
Biganzoli, Laura ;
Pestrin, Marta ;
Bertini, Ivano ;
Di Leo, Angelo .
JOURNAL OF CLINICAL ONCOLOGY, 2007, 25 (19) :2840-2846
[7]   Comparison of GC-MS, GC-MRM-MS, and GC x GC to characterise higher plant biomarkers in Tertiary oils and rock extracts [J].
Eiserbeck, Christiane ;
Nelson, Robert K. ;
Grice, Kliti ;
Curiale, Joseph ;
Reddy, Christopher M. .
GEOCHIMICA ET COSMOCHIMICA ACTA, 2012, 87 :299-322
[8]   Aldose reductase induced by hyperosmotic stress mediates cardiomyocyte apoptosis - Differential effects of sorbitol and mannitol [J].
Galvez, AS ;
Ulloa, JA ;
Chiong, M ;
Criollo, A ;
Eisner, V ;
Barros, LF ;
Lavandero, S .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (40) :38484-38494
[9]   Prevention of hepatocarcinogenesis and increased susceptibility to acetaminophen-induced liver failure in transaldolase-deficient mice by N-acetylcysteine [J].
Hanczko, Robert ;
Fernandez, David R. ;
Doherty, Edward ;
Qian, Yueming ;
Vas, Gyorgy ;
Niland, Brian ;
Telarico, Tiffany ;
Garba, Adinoyi ;
Banerjee, Sanjay ;
Middleton, Frank A. ;
Barrett, Donna ;
Barcza, Maureen ;
Banki, Katalin ;
Landas, Steve K. ;
Perl, Andras .
JOURNAL OF CLINICAL INVESTIGATION, 2009, 119 (06) :1546-1557
[10]   A metabolomic approach to lung cancer [J].
Hori, Suya ;
Nishiumi, Shin ;
Kobayashi, Kazuyuki ;
Shinohara, Masakazu ;
Hatakeyama, Yukihisa ;
Kotani, Yoshikazu ;
Hatano, Naoya ;
Maniwa, Yoshimasa ;
Nishio, Wataru ;
Bamba, Takeshi ;
Fukusaki, Eiichiro ;
Azuma, Takeshi ;
Takenawa, Tadaomi ;
Nishimura, Yoshihiro ;
Yoshida, Masaru .
LUNG CANCER, 2011, 74 (02) :284-292