Glycosylation Enhances Peptide Hydrophobic Collapse by Impairing Solvation

被引:13
作者
Cheng, Shanmei [1 ]
Edwards, Scott A. [1 ]
Jiang, Yindi [1 ]
Graeter, Frauke [1 ,2 ,3 ]
机构
[1] Chinese Acad Sci, Shanghai Inst Biol Sci, CAS MPG Partner Inst Computat Biol, Shanghai 200031, Peoples R China
[2] Heidelberg Univ, Bioquant BQ0031, INF 267, D-69120 Heidelberg, Germany
[3] Max Planck Inst Met Res, D-70569 Stuttgart, Germany
关键词
glycopeptides; glycosylation; hydrogen bonds; molecular dynamics; protein folding; MOLECULAR-DYNAMICS SIMULATIONS; GROMOS FORCE-FIELD; N-LINKED GLYCAN; ENDOPLASMIC-RETICULUM; TERAHERTZ SPECTROSCOPY; POTENTIAL FUNCTIONS; UNFOLDING PATHWAY; PROTEIN COLLAPSE; QUALITY-CONTROL; RIBONUCLEASE-A;
D O I
10.1002/cphc.201000205
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Post-translational N-glycosylation of proteins is ubiquitous in eukaryotic cells, and has been shown to influence the thermodynamics of protein collapse and folding. However, the mechanism for this influence is not well understood. All-atom molecular dynamics simulations are carried out to study the collapse of a peptide linked to a single N-glycan. The glycan is shown to perturb the local water hydrogen-bonding network, rendering it less able to solvate the peptide and thus enhancing the hydrophobic contribution to the free energy of collapse. The enhancement of the hydrophobic collapse compensates for the weakened entropic coiling due to the bulky glycan chain and leads to a stronger burial of hydrophobic surface, presumably enhancing folding. This conclusion is reinforced by comparison with coarse-grained simulations, which contain no explicit solvent and correspondingly exhibit no significant thermodynamic changes on glycosylation.
引用
收藏
页码:2367 / 2374
页数:8
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