Sub-2 Angstrom resolution structure determination using single-particle cryo-EM at 200 keV

被引:47
作者
Wu, Mengyu [1 ]
Lander, Gabriel C. [1 ]
Herzik, Mark A., Jr. [2 ]
机构
[1] Scripps Res Inst, Dept Integrat Struct & Computat Biol, HZ 175,10550 N Torrey Pines Rd, La Jolla, CA 92037 USA
[2] Univ Calif San Diego, Dept Chem & Biochem, 9500 Gilman Dr 0378, La Jolla, CA 92093 USA
基金
美国国家科学基金会;
关键词
Cryo-EM; Single particle cryo-EM; 200; keV; Electron microscopy; Microscope aberrations; Two-condenser lens; ELECTRON-MICROSCOPY; ORIENTATION; LIMITATIONS; GUI;
D O I
10.1016/j.yjsbx.2020.100020
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Although the advent of direct electron detectors (DEDs) and software developments have enabled the routine use of single-particle cryogenic electron microscopy (cryo-EM) for structure determination of well-behaved specimens to high-resolution, there nonetheless remains a discrepancy between the resolutions attained for biological specimens and the information limits of modern transmission electron microscopes (TEMs). Instruments operating at 300 kV equipped with DEDs are the current paradigm for high-resolution single-particle cryo-EM, while 200 kV TEMs remain comparatively underutilized for purposes beyond sample screening. Here, we expand upon our prior work and demonstrate that one such 200 kV microscope, the Talos Arctica, equipped with a K2 DED is capable of determining structures of macromolecules to as high as similar to 1.7 angstrom resolution. At this resolution, ordered water molecules are readily assigned and holes in aromatic residues can be clearly distinguished in the reconstructions. This work emphasizes the utility of 200 kV electrons for high-resolution single-particle cryo-EM and applications such as structure-based drug design.
引用
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页数:9
相关论文
共 57 条
[1]   CRYO-ELECTRON MICROSCOPY OF VIRUSES [J].
ADRIAN, M ;
DUBOCHET, J ;
LEPAULT, J ;
MCDOWALL, AW .
NATURE, 1984, 308 (5954) :32-36
[2]   Real-space refinement in PHENIX for cryo-EM and crystallography [J].
Afonine, Pavel V. ;
Poon, Billy K. ;
Read, Randy J. ;
Sobolev, Oleg V. ;
Terwilliger, Thomas C. ;
Urzhumtsev, Alexandre ;
Adams, Paul D. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2018, 74 :531-544
[3]   Best practices for managing large CryoEM facilities [J].
Alewijnse, Bart ;
Ashton, Alun W. ;
Chambers, Melissa G. ;
Chen, Songye ;
Cheng, Anchi ;
Ebrahim, Mark ;
Eng, Edward T. ;
Hagen, Wim J. H. ;
Koster, Abraham J. ;
Lopez, Claudia S. ;
Lukoyanova, Natalya ;
Ortega, Joaquin ;
Renault, Ludovic ;
Reyntjens, Steve ;
Rice, William J. ;
Scapin, Giovanna ;
Schrijver, Raymond ;
Siebert, Alistair ;
Stagg, Scott M. ;
Grum-Tokars, Valerie ;
Wright, Elizabeth R. ;
Wu, Shenping ;
Yu, Zhiheng ;
Zhou, Z. Hong ;
Carragher, Bridget ;
Potter, Clinton S. .
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 199 (03) :225-236
[4]   An atomic structure of human γ-secretase [J].
Bai, Xiao-chen ;
Yan, Chuangye ;
Yang, Guanghui ;
Lu, Peilong ;
Ma, Dan ;
Sun, Linfeng ;
Zhou, Rui ;
Scheres, Sjors H. W. ;
Shi, Yigong .
NATURE, 2015, 525 (7568) :212-+
[5]   Atomic Resolution Cryo-EM Structure of β-Galactosidase [J].
Bartesaghi, Alberto ;
Aguerrebere, Cecilia ;
Falconieri, Veronica ;
Banerjee, Soojay ;
Earl, Lesley A. ;
Zhu, Xing ;
Grigorieff, Nikolaus ;
Milne, Jacqueline L. S. ;
Sapiro, Guillermo ;
Wu, Xiongwu ;
Subramaniam, Sriram .
STRUCTURE, 2018, 26 (06) :848-+
[6]   2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor [J].
Bartesaghi, Alberto ;
Merk, Alan ;
Banerjee, Soojay ;
Matthies, Doreen ;
Wu, Xiongwu ;
Milne, Jacqueline L. S. ;
Subramaniam, Sriram .
SCIENCE, 2015, 348 (6239) :1147-1151
[7]  
Bromberg R., 2019, HIGH RESOLUTION CRYO
[8]   One number does not fit all: Mapping local variations in resolution in cryo-EM reconstructions [J].
Cardone, Giovanni ;
Heymann, J. Bernard ;
Steven, Alasdair C. .
JOURNAL OF STRUCTURAL BIOLOGY, 2013, 184 (02) :226-236
[9]   Protein denaturation at the air-water interface and how to prevent it [J].
D'Imprima, Edoardo ;
Floris, Davide ;
Joppe, Mirko ;
Sanchez, Ricardo ;
Grininger, Martin ;
Kuehlbrandt, Werner .
ELIFE, 2019, 8
[10]   Atomic structure of the 26S proteasome lid reveals the mechanism of deubiquitinase inhibition [J].
Dambacher, Corey M. ;
Worden, Evan J. ;
Herzik, Mark A., Jr. ;
Martin, Andreas ;
Lander, Gabriel C. .
ELIFE, 2016, 5