Next-generation sequencing-based analysis of the effect of N6-methyldeoxyadenosine modification on DNA replication in human cells

被引:7
作者
Wang, Juan [1 ]
Sheng, Yuwei [1 ]
Yang, Ying [1 ]
Dai, Xiaoxia [1 ]
You, Changjun [1 ]
机构
[1] Hunan Univ, Coll Chem & Chem Engn, Mol Sci & Biomed Lab, State Key Lab Chemo Biosensing & Chemometr,Hunan, Changsha 410082, Hunan, Peoples R China
基金
中国国家自然科学基金;
关键词
N-6-methyldeoxyadenosine; DNA replication; Next-generation sequencing; Shuttle vector technology; Translesion synthesis DNA polymerase; TRANSLESION SYNTHESIS; POLYMERASES KAPPA; RNA; N-6-METHYLADENINE; BYPASS; N-6-ADENINE; METHYLATION; REVEALS; CONTEXT; LESIONS;
D O I
10.1016/j.cclet.2021.08.066
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
N-6-methyldeoxyadenosine (6mdA) modification is considered as a new epigenetic mark that may play important roles in various biological processes. However, it remains unclear about the effect of 6mdA on DNA replication in human cells. Herein, we combined next-generation sequencing with shuttle vector technology to explore how 6mdA affects the efficiency and accuracy of DNA replication in human cells. Our results showed that 6mdA neither blocked DNA replication nor induced mutations in human cells. Moreover, we found that the depletion of translesion synthesis DNA polymerase (Pol) kappa, Pol eta, Pol iota or Pol zeta did not significantly change the biological consequences of 6mdA during replication in human cells. The negligible impact of 6mdA on DNA replication is consistent with its potential role in epigenetic gene expression. (C) 2021 Published by Elsevier B.V. on behalf of Chinese Chemical Society and Institute of Materia Medica, Chinese Academy of Medical Sciences.
引用
收藏
页码:2077 / 2080
页数:4
相关论文
共 39 条
  • [1] Next-generation sequencing reveals the biological significance of the N2,3-ethenoguanine lesion in vivo
    Chang, Shiou-chi
    Fedeles, Bogdan I.
    Wu, Jie
    Delaney, James C.
    Li, Deyu
    Zhao, Linlin
    Christov, Plamen P.
    Yau, Emily
    Singh, Vipender
    Jost, Marco
    Drennan, Catherine L.
    Marnett, Lawrence J.
    Rizzo, Carmelo J.
    Levine, Stuart S.
    Guengerich, F. Peter
    Essigmann, John M.
    [J]. NUCLEIC ACIDS RESEARCH, 2015, 43 (11) : 5489 - 5500
  • [2] Genetic Control of Replication through N1-methyladenine in Human Cells
    Conde, Juan
    Yoon, Jung-Hoon
    Choudhury, Jayati Roy
    Prakash, Louise
    Prakash, Satya
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2015, 290 (50) : 29794 - 29800
  • [3] RNA N6-methyladenosine modification in cancers: current status and perspectives
    Deng, Xiaolan
    Su, Rui
    Weng, Hengyou
    Huang, Huilin
    Li, Zejuan
    Chen, Jianjun
    [J]. CELL RESEARCH, 2018, 28 (05) : 507 - 517
  • [4] Epigenetically modified N6-methyladenine inhibits DNA replication by human DNA polymerase η
    Du, Ke
    Zhang, Xiangqian
    Zou, Zhenyu
    Li, Bianbian
    Gu, Shiling
    Zhang, Shuming
    Qu, Xiaoyi
    Ling, Yihui
    Zhang, Huidong
    [J]. DNA REPAIR, 2019, 78 : 81 - 90
  • [5] N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas
    Fu, Ye
    Luo, Guan-Zheng
    Chen, Kai
    Deng, Xin
    Yu, Miao
    Han, Dali
    Hao, Ziyang
    Liu, Jianzhao
    Lu, Xingyu
    Dore, Louis C.
    Weng, Xiaocheng
    Ji, Quanjiang
    Mets, Laurens
    He, Chuan
    [J]. CELL, 2015, 161 (04) : 879 - 892
  • [6] DNA Methylation on N6-Adenine in C-elegans
    Greer, Eric Lieberman
    Blanco, Mario Andres
    Gu, Lei
    Sendinc, Erdem
    Liu, Jianzhao
    Aristizabal-Corrales, David
    Hsu, Chih-Hung
    Aravind, L.
    He, Chuan
    Shi, Yang
    [J]. CELL, 2015, 161 (04) : 868 - 878
  • [7] N6-Deoxyadenosine Methylation in Mammalian Mitochondrial DNA
    Hao, Ziyang
    Wu, Tong
    Cui, Xiaolong
    Zhu, Pingping
    Tan, Caiping
    Dou, Xiaoyang
    Hsu, Kai-Wen
    Lin, Yueh-Te
    Peng, Pei-Hua
    Zhang, Li-Sheng
    Gao, Yawei
    Hu, Lulu
    Sun, Hui-Lung
    Zhu, Allen
    Liu, Jianzhao
    Wu, Kou-Juey
    He, Chuan
    [J]. MOLECULAR CELL, 2020, 78 (03) : 382 - +
  • [8] 6mA-DNA-binding factor Jumu controls maternal-to-zygotic transition upstream of Zelda
    He, Shunmin
    Zhang, Guoqiang
    Wang, Jiajia
    Gao, Yajie
    Sun, Ruidi
    Cao, Zhijie
    Chen, Zhenping
    Zheng, Xiudeng
    Yuan, Jiao
    Luo, Yuewan
    Wang, Xiaona
    Zhang, Wenxin
    Zhang, Peng
    Zhao, Yi
    He, Chuan
    Tao, Yi
    Sun, Qinmiao
    Chen, Dahua
    [J]. NATURE COMMUNICATIONS, 2019, 10 (1)
  • [9] An Adenine Code for DNA: A Second Life for N6-Methyladenine
    Heyn, Holger
    Esteller, Manel
    [J]. CELL, 2015, 161 (04) : 710 - 713
  • [10] DNA methylation-based biomarkers and the epigenetic clock theory of ageing
    Horvath, Steve
    Raj, Kenneth
    [J]. NATURE REVIEWS GENETICS, 2018, 19 (06) : 371 - 384